Rh7BG009400
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004135
Physical Location & Seq
Reverse (-)
599037 .. 603740
4704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG009400.1

Sequence Viewer

Length: 1419 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTCACAGTGACGATGCTGCTACTACTCCACACGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACAAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCCGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGACCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGCTGCTGCTGCTGCTATGGGAGCAGGAGTAGGAGGAGGGTTTGAGTCCAGGTATAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGCTCATCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGTGATGAAGATCTTATGTCCACAACAACGACAACGCATCATCAGAATTCAGCAAATGGTTTACTAAACCAAAGAGGAGGCTCAAATGCAAGTTTAAATTTAGAGCAAGATACGGAACACCCTTCTAGCAATCTGTGGGGTAACTCTTCCAGTAGAGGAGCATGGGTGCAAGCAAGTTCAAGAGATCTAAATGGCCACTCTCAACATAGAAGTCCTGGAAACCTATTTCATCATCACGAGGGAAGTGATTTTGCCCAATCACGCAGTAGCTTTGTAGATCTCTCAAATGGGGACTTCATCAAAAATCCAAGCTTGGAGTTCAGCTTAGGGCGACCGGACTGGCACAGCAAAGAAGTACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

472

Amino Acids

51.51

Weight (kDa)

6.64

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 285 - 336 3.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 934
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 847
AciI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
AcoI YGGCCR 4 cut(s) 315, 363, 913, 1246
AcsI RAATTY 3 cut(s) 393, 1099, 1150
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 1 cut(s) 1410
AfiI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 922, 1047
AgsI TTSAA 3 cut(s) 31, 109, 1233
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 605, 1267
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 714
Alw21I GWGCWC 5 cut(s) 79, 144, 748, 906, 951
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 664, 694, 697
AoxI GGCC 7 cut(s) 102, 243, 315, 343, 363, 913, 1246
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 393, 1099, 1150
AspS9I GGNCC 2 cut(s) 460, 864
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 668, 779, 1067
AvaII GGWCC 2 cut(s) 460, 864
BaeGI GKGCMC 2 cut(s) 144, 850
BalI TGGCCA 1 cut(s) 1248
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 3 cut(s) 748, 906, 951
BauI CACGAG 1 cut(s) 1289
Bbv12I GWGCWC 5 cut(s) 79, 144, 748, 906, 951
BccI CCATC 4 cut(s) 392, 687, 855, 1040
BceAI ACGGC 4 cut(s) 163, 358, 508, 881
BciT130I CCWGG 2 cut(s) 607, 1269
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 5 cut(s) 155, 371, 468, 804, 1179
BfmI CTRYAG 3 cut(s) 90, 698, 1032
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 5 cut(s) 800, 964, 1063, 1237, 1330
BmcAI AGTACT 1 cut(s) 1410
Bme1390I CCNGG 3 cut(s) 555, 607, 1269
Bme18I GGWCC 2 cut(s) 460, 864
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 460, 864
BmiI GGNNCC 2 cut(s) 462, 849
BmrFI CCNGG 3 cut(s) 555, 607, 1269
BmsI GCATC 3 cut(s) 166, 712, 1099
BoxI GACNNNNGTC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 1378
BpuMI CCSGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 1 cut(s) 907
BsaWI WCCGGW 1 cut(s) 1387
BsaXI ACNNNNNCTCC 6 cut(s) 570, 600, 711, 741, 1203, 1233
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 389, 469, 922, 1047
Bse1I ACTGG 3 cut(s) 398, 1203, 1397
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 607, 1269
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 922, 1047
BseMII CTCAG 2 cut(s) 198, 1056
BseNI ACTGG 3 cut(s) 398, 1203, 1397
BseRI GAGGAG 3 cut(s) 606, 1143, 1224
BseSI GKGCMC 2 cut(s) 144, 850
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 2 cut(s) 318, 1388
BshFI GGCC 7 cut(s) 104, 245, 317, 345, 365, 915, 1248
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 2 cut(s) 318, 1388
BsiHKAI GWGCWC 5 cut(s) 79, 144, 748, 906, 951
BsiSI CCGG 2 cut(s) 555, 1388
BslFI GGGAC 1 cut(s) 1358
BslI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 922, 1047
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 1358
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 7 cut(s) 104, 245, 317, 345, 365, 915, 1248
Bsp1286I GDGCHC 6 cut(s) 79, 144, 748, 850, 906, 951
Bsp143I GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
BspACI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
BspANI GGCC 7 cut(s) 104, 245, 317, 345, 365, 915, 1248
BspCNI CTCAG 2 cut(s) 199, 1055
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 462, 849
BspMAI CTGCAG 2 cut(s) 94, 702
BspMI ACCTGC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 847
BsrI ACTGG 3 cut(s) 398, 1203, 1397
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
BssSI CACGAG 1 cut(s) 1289
BssT1I CCWWGG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 1289
Bst2UI CCWGG 2 cut(s) 607, 1269
Bst4CI ACNGT 5 cut(s) 74, 170, 632, 660, 1012
Bst6I CTCTTC 1 cut(s) 1204
BstAPI GCANNNNNTGC 2 cut(s) 98, 697
BstC8I GCNNGC 2 cut(s) 309, 1224
BstDEI CTNAG 4 cut(s) 207, 635, 1042, 1378
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 7 cut(s) 46, 301, 803, 967, 1066, 1240, 1333
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
BstMCI CGRYCG 2 cut(s) 318, 1388
BstMWI GCNNNNNNNGC 7 cut(s) 98, 242, 566, 569, 578, 697, 700
BstNI CCWGG 2 cut(s) 607, 1269
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 3 cut(s) 553, 605, 1267
BstSFI CTRYAG 3 cut(s) 90, 698, 1032
BstSLI GKGCMC 2 cut(s) 144, 850
BstX2I RGATCY 5 cut(s) 800, 964, 1063, 1237, 1330
BstYI RGATCY 5 cut(s) 800, 964, 1063, 1237, 1330
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 7 cut(s) 104, 245, 317, 345, 365, 915, 1248
BtgZI GCGATG 1 cut(s) 874
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 945, 1020
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 309, 1224
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 664, 694, 697
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 460, 864
Csp6I GTAC 1 cut(s) 1409
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 9 cut(s) 264, 352, 764, 796, 841, 917, 952, 980, 1215
CviQI GTAC 1 cut(s) 1409
DdeI CTNAG 4 cut(s) 207, 635, 1042, 1378
DpnI GATC 7 cut(s) 45, 300, 802, 966, 1065, 1239, 1332
DpnII GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
DraI TTTAAA 1 cut(s) 1149
DrdI GACNNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 4 cut(s) 315, 363, 913, 1246
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 1204
Ecl136II GAGCTC 3 cut(s) 746, 904, 949
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 907
Eco24I GRGCYC 3 cut(s) 748, 906, 951
Eco47I GGWCC 2 cut(s) 460, 864
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 3 cut(s) 746, 904, 949
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 3 cut(s) 746, 904, 949
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRI GAATTC 2 cut(s) 393, 1099
EcoRII CCWGG 2 cut(s) 605, 1267
EcoT14I CCWWGG 1 cut(s) 907
EcoT38I GRGCYC 3 cut(s) 748, 906, 951
ErhI CCWWGG 1 cut(s) 907
FaeI CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
FalI AAGNNNNNCTT 3 cut(s) 488, 520, 1395
FaqI GGGAC 1 cut(s) 1358
FatI CATG 9 cut(s) 263, 351, 763, 795, 840, 916, 951, 979, 1214
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 3 cut(s) 748, 906, 951
FspBI CTAG 5 cut(s) 155, 371, 468, 804, 1179
HaeIII GGCC 7 cut(s) 104, 245, 317, 345, 365, 915, 1248
HapII CCGG 2 cut(s) 555, 1388
Hin1II CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
HindIII AAGCTT 2 cut(s) 497, 1363
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 602, 667, 928
HpaII CCGG 2 cut(s) 555, 1388
HphI GGTGA 3 cut(s) 668, 779, 1067
Hpy166II GTNNAC 4 cut(s) 142, 892, 1074, 1115
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 666, 828, 1045, 1098
Hpy188III TCNNGA 5 cut(s) 41, 796, 804, 1233, 1289
Hpy8I GTNNAC 4 cut(s) 142, 892, 1074, 1115
Hpy99I CGWCG 3 cut(s) 140, 149, 902
HpyAV CCTTC 3 cut(s) 115, 556, 1185
HpyCH4III ACNGT 5 cut(s) 74, 170, 632, 660, 1012
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 92, 123, 142, 221, 542, 700, 997, 1142, 1222
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 242, 566, 569, 578, 697, 700
HpyF3I CTNAG 4 cut(s) 207, 635, 1042, 1378
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
Kzo9I GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
LmnI GCTCC 8 cut(s) 82, 437, 578, 743, 875, 909, 946, 1211
LweI GCATC 3 cut(s) 166, 712, 1099
MaeI CTAG 5 cut(s) 155, 371, 468, 804, 1179
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 170, 251, 338, 1193
MalI GATC 7 cut(s) 45, 300, 802, 966, 1065, 1239, 1332
MboI GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
MboII GAAGA 4 cut(s) 280, 1027, 1073, 1191
MflI RGATCY 5 cut(s) 800, 964, 1063, 1237, 1330
MhlI GDGCHC 6 cut(s) 79, 144, 748, 850, 906, 951
MlsI TGGCCA 1 cut(s) 1248
MluCI AATT 6 cut(s) 393, 427, 454, 490, 1099, 1150
MluNI TGGCCA 1 cut(s) 1248
MlyI GAGTC 4 cut(s) 32, 89, 611, 922
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 1248
MscI TGGCCA 1 cut(s) 1248
MseI TTAA 2 cut(s) 984, 1148
MslI CAYNNNNRTG 4 cut(s) 137, 714, 762, 765
Msp20I TGGCCA 1 cut(s) 1248
MspA1I CMGCKG 3 cut(s) 314, 485, 694
MspI CCGG 2 cut(s) 555, 1388
MspR9I CCNGG 3 cut(s) 555, 607, 1269
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 2 cut(s) 607, 1269
MwoI GCNNNNNNNGC 7 cut(s) 98, 242, 566, 569, 578, 697, 700
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 113
NdeII GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
NlaIII CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
NlaIV GGNNCC 2 cut(s) 462, 849
NmeAIII GCCGAG 2 cut(s) 271, 391
NmuCI GTSAC 3 cut(s) 170, 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 714
PagI TCATGA 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 818
PctI GAATGC 1 cut(s) 861
PfeI GAWTC 4 cut(s) 31, 37, 375, 667
PfoI TCCNGGA 1 cut(s) 1267
PleI GAGTC 4 cut(s) 31, 89, 610, 922
PpsI GAGTC 4 cut(s) 31, 89, 610, 922
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 3 cut(s) 748, 906, 951
Psp6I CCWGG 2 cut(s) 605, 1267
PspGI CCWGG 2 cut(s) 605, 1267
PspN4I GGNNCC 2 cut(s) 462, 849
PspPI GGNCC 2 cut(s) 460, 864
PstI CTGCAG 2 cut(s) 94, 702
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 664, 694, 697
PsuI RGATCY 5 cut(s) 800, 964, 1063, 1237, 1330
PvuII CAGCTG 2 cut(s) 485, 694
RsaI GTAC 1 cut(s) 1410
RsaNI GTAC 1 cut(s) 1409
RseI CAYNNNNRTG 4 cut(s) 137, 714, 762, 765
SacI GAGCTC 3 cut(s) 748, 906, 951
SaqAI TTAA 2 cut(s) 984, 1148
Sau3AI GATC 7 cut(s) 43, 298, 800, 964, 1063, 1237, 1330
Sau96I GGNCC 2 cut(s) 460, 864
ScaI AGTACT 1 cut(s) 1410
SchI GAGTC 4 cut(s) 32, 89, 611, 922
ScrFI CCNGG 3 cut(s) 555, 607, 1269
SduI GDGCHC 6 cut(s) 79, 144, 748, 850, 906, 951
SfaNI GCATC 3 cut(s) 166, 712, 1099
SfcI CTRYAG 3 cut(s) 90, 698, 1032
SinI GGWCC 2 cut(s) 460, 864
SmiMI CAYNNNNRTG 4 cut(s) 137, 714, 762, 765
Sse9I AATT 6 cut(s) 393, 427, 454, 490, 1099, 1150
SsiI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
SspMI CTAG 5 cut(s) 155, 371, 468, 804, 1179
SstI GAGCTC 3 cut(s) 748, 906, 951
StyD4I CCNGG 3 cut(s) 553, 605, 1267
StyI CCWWGG 1 cut(s) 907
TaaI ACNGT 5 cut(s) 74, 170, 632, 660, 1012
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 900
TasI AATT 6 cut(s) 393, 427, 454, 490, 1099, 1150
TatI WGTACW 1 cut(s) 1408
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 915
TfiI GAWTC 4 cut(s) 31, 37, 375, 667
Tru1I TTAA 2 cut(s) 984, 1148
Tru9I TTAA 2 cut(s) 984, 1148
TscAI CASTG 5 cut(s) 79, 175, 211, 945, 1027
TseFI GTSAC 3 cut(s) 170, 251, 338
Tsp45I GTSAC 3 cut(s) 170, 251, 338
TspDTI ATGAA 7 cut(s) 44, 290, 781, 933, 1074, 1271, 1339
TspGWI ACGGA 2 cut(s) 429, 1181
TspRI CASTG 5 cut(s) 79, 175, 211, 945, 1027
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 460, 864
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 393, 1099, 1150
XbaI TCTAGA 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 719
XspI CTAG 5 cut(s) 155, 371, 468, 804, 1179
ZrmI AGTACT 1 cut(s) 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.