AT5G24680

Peptidase C78, ubiquitin fold modifier-specific peptidase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007168
Physical Location & Seq
Forward (+)
8453575 .. 8455518
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24680.1

Sequence Viewer

Length: 1200 bp
ATGTCAGCTTTGTGTCCTGTCTGCAATCTCACGCTTCCTCTCTCCCTAATCCAAAGCCATGTGAATTCCCACTTCGAAGACGATGAAATCAATCCACAAATCGAAACCGATCACCACTTGGCTCTGCAACTCGCTTCTGATGATCATTCTTCTGATGATCCTTCTTCGTCTTCCTCTGCTTCATCATCTAACAACGTTGCCTCCTTGGTCCAGTTACAGACTAAGAGTCAATTCTATAGTGTAGGTCATGGTGGTTTGATTTGTTTGCTGAGGAACTGTCTGGAGTCAGAACTGAAATTGAAGTCGAAACCTTTAGAGTGTAGTACTAGTTTACTATCAGGCTTTGTTGATCATTTTCAATCTTCGAAGGAGGATAAAGGTTGGGGATGTGGATGGAAGAACATTCAAATGCAATGCTCTCATTTGCTTTCTCATAGAGAAGAAGCTAAGAGAGTTCTCTTTGGTGGTTCTAATTTTGTTCCTGATATTCCTTCGCTCCAGCGATGGCTTGAGTTAGCTTGGAACAAGGGGTTTGATGTTTCTGGAGCTCTTCATTTTGATAATCGAATATGTGGTTCCAAGAGATGGATTGGAACTACTGAATGTGCTGCGTTGTTACGTTCTTTCGGGTTGAAAGCGAGGATTGTTGATTTTGCTCCCGAGAAGTCTAAATCGATGTATCTTTCAGTTCCTGGTTCTGCTATTGCACCCAAGGTAAAGTCATATGGTCCCATGGACAGATATATGGTTAAAAAGGGGGGAAGTGGGAAGGGAAAAGCAGTTGACTCTCATAGTTCTAATTCTTCTAGGATCAGCAAAGGAGCGGTTTTAATGGAATGGGTTTGGAATTACTTCTCAGATAACAGGTTAAGTGTTTCATCCGGTGTTCATATTACGAATAAAGGGCCCTTGTATTTCCAACATGAAGGGCACTCGAGGACAATTGTTGGGGTTCAGAGACGGTTGCAAGGAACTACATTTACTCCTCAGTACAATCTCCTAATTTTGGACCCGGCTGATTTTACTAGAGCTATAGAGATAGCGCTTATAGAGAAGAGAGGATGGGAGGGATATCTTAAAAGAGGAGCTCACACACTGAAATGCCCCGAGTATCAGATGCTGTACGTTGATAATGGAATTGCTGATGGAGAGGAGTTGGAGAAGCTCAAAACCATTGATAGTCACTTTGTTGAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

399

Amino Acids

44.31

Weight (kDa)

7.24

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C78 PF07910 107 - 374 4.5e-48 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 824
AciI CCGC 1 cut(s) 824
AclI AACGTT 1 cut(s) 195
AclWI GGATC 2 cut(s) 152, 818
AcsI RAATTY 2 cut(s) 64, 1193
AfaI GTAC 3 cut(s) 325, 992, 1124
AfeI AGCGCT 1 cut(s) 1044
AfiI CCNNNNNNNGG 2 cut(s) 585, 1006
AgsI TTSAA 5 cut(s) 301, 359, 407, 634, 1193
AhdI GACNNNNNGTC 1 cut(s) 225
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 7 cut(s) 8, 446, 518, 548, 1031, 1088, 1165
AluI AGCT 7 cut(s) 8, 446, 518, 548, 1031, 1088, 1165
Alw21I GWGCWC 2 cut(s) 550, 1090
Alw26I GTCTC 1 cut(s) 952
AlwI GGATC 2 cut(s) 152, 818
AlwNI CAGNNNCTG 2 cut(s) 692, 1120
Ama87I CYCGRG 3 cut(s) 659, 934, 1106
Aor51HI AGCGCT 1 cut(s) 1044
AoxI GGCC 1 cut(s) 905
ApaI GGGCCC 1 cut(s) 909
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 64, 1193
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 1 cut(s) 1045
AspS9I GGNCC 5 cut(s) 208, 728, 905, 906, 1009
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 1 cut(s) 104
AsuII TTCGAA 2 cut(s) 75, 365
AvaI CYCGRG 3 cut(s) 659, 934, 1106
AvaII GGWCC 3 cut(s) 208, 728, 1009
BaeGI GKGCMC 2 cut(s) 909, 933
BanII GRGCYC 3 cut(s) 550, 909, 1090
BbsI GAAGAC 2 cut(s) 84, 162
Bbv12I GWGCWC 2 cut(s) 550, 1090
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 595
BccI CCATC 5 cut(s) 387, 498, 579, 1056, 1139
BciT130I CCWGG 1 cut(s) 693
BclI TGATCA 2 cut(s) 142, 349
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 1 cut(s) 952
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 3 cut(s) 327, 807, 1026
BfmI CTRYAG 2 cut(s) 235, 1032
BfoI RGCGCY 1 cut(s) 1046
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 693, 1013
Bme18I GGWCC 3 cut(s) 208, 728, 1009
BmeRI GACNNNNNGTC 1 cut(s) 225
BmeT110I CYCGRG 3 cut(s) 659, 934, 1106
BmgT120I GGNCC 5 cut(s) 208, 728, 905, 906, 1009
BmiI GGNNCC 4 cut(s) 577, 730, 907, 1011
BmrFI CCNGG 2 cut(s) 693, 1013
BmsI GCATC 1 cut(s) 1107
BpiI GAAGAC 2 cut(s) 84, 162
BpmI CTGGAG 3 cut(s) 302, 482, 564
Bpu10I CCTNAGC 1 cut(s) 269
Bpu14I TTCGAA 2 cut(s) 75, 365
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 1013
Bsa29I ATCGAT 1 cut(s) 674
BsaJI CCNNGG 3 cut(s) 204, 711, 732
BsaWI WCCGGW 1 cut(s) 881
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 967, 997
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 1006
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 419
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 1 cut(s) 674
BseDI CCNNGG 3 cut(s) 204, 711, 732
BseGI GGATG 4 cut(s) 392, 398, 878, 1067
BseLI CCNNNNNNNGG 2 cut(s) 585, 1006
BseMI GCAATG 1 cut(s) 419
BseMII CTCAG 3 cut(s) 260, 870, 1001
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 975, 1098, 1166
BseSI GKGCMC 2 cut(s) 909, 933
BseXI GCAGC 1 cut(s) 595
BshFI GGCC 1 cut(s) 907
BshVI ATCGAT 1 cut(s) 674
BsiHKAI GWGCWC 2 cut(s) 550, 1090
BsiHKCI CYCGRG 3 cut(s) 659, 934, 1106
BsiSI CCGG 2 cut(s) 882, 1013
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 585, 1006
BsmAI GTCTC 1 cut(s) 952
BsmBI CGTCTC 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 1 cut(s) 907
BsoBI CYCGRG 3 cut(s) 659, 934, 1106
Bsp119I TTCGAA 2 cut(s) 75, 365
Bsp120I GGGCCC 1 cut(s) 905
Bsp1286I GDGCHC 4 cut(s) 550, 909, 933, 1090
Bsp143I GATC 5 cut(s) 109, 142, 157, 349, 810
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 1 cut(s) 824
BspANI GGCC 1 cut(s) 907
BspCNI CTCAG 3 cut(s) 261, 869, 1000
BspDI ATCGAT 1 cut(s) 674
BspLI GGNNCC 4 cut(s) 577, 730, 907, 1011
BspPI GGATC 2 cut(s) 152, 818
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 2 cut(s) 75, 365
BsrBI CCGCTC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 419
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 204, 711, 732
BssMI GATC 5 cut(s) 109, 142, 157, 349, 810
BssT1I CCWWGG 3 cut(s) 204, 711, 732
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 278, 963
Bst6I CTCTTC 2 cut(s) 555, 1049
BstBI TTCGAA 2 cut(s) 75, 365
BstDEI CTNAG 5 cut(s) 222, 269, 447, 856, 987
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 4 cut(s) 392, 398, 878, 1067
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 5 cut(s) 112, 145, 160, 352, 813
BstMAI GTCTC 1 cut(s) 952
BstMBI GATC 5 cut(s) 109, 142, 157, 349, 810
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 2 cut(s) 691, 1011
BstSFI CTRYAG 2 cut(s) 235, 1032
BstSLI GKGCMC 2 cut(s) 909, 933
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 2 cut(s) 84, 162
Bsu15I ATCGAT 1 cut(s) 674
BsuRI GGCC 1 cut(s) 907
BsuTUI ATCGAT 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 732
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 4 cut(s) 392, 398, 878, 1067
BtsIMutI CAGTG 1 cut(s) 1094
CaiI CAGNNNCTG 2 cut(s) 692, 1120
CfoI GCGC 1 cut(s) 1045
Cfr13I GGNCC 5 cut(s) 208, 728, 905, 906, 1009
ClaI ATCGAT 1 cut(s) 674
Csp6I GTAC 3 cut(s) 324, 991, 1123
CviAII CATG 4 cut(s) 59, 248, 733, 923
CviQI GTAC 3 cut(s) 324, 991, 1123
DdeI CTNAG 5 cut(s) 222, 269, 447, 856, 987
DpnI GATC 5 cut(s) 111, 144, 159, 351, 812
DpnII GATC 5 cut(s) 109, 142, 157, 349, 810
DriI GACNNNNNGTC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 555, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 225
EarI CTCTTC 2 cut(s) 555, 1049
Ecl136II GAGCTC 2 cut(s) 548, 1088
Eco130I CCWWGG 3 cut(s) 204, 711, 732
Eco24I GRGCYC 3 cut(s) 550, 909, 1090
Eco32I GATATC 1 cut(s) 1073
Eco47I GGWCC 3 cut(s) 208, 728, 1009
Eco47III AGCGCT 1 cut(s) 1044
Eco53kI GAGCTC 2 cut(s) 548, 1088
Eco88I CYCGRG 3 cut(s) 659, 934, 1106
EcoICRI GAGCTC 2 cut(s) 548, 1088
EcoO109I RGGNCCY 2 cut(s) 905, 906
EcoRI GAATTC 2 cut(s) 64, 1193
EcoRII CCWGG 1 cut(s) 691
EcoRV GATATC 1 cut(s) 1073
EcoT14I CCWWGG 3 cut(s) 204, 711, 732
EcoT38I GRGCYC 3 cut(s) 550, 909, 1090
ErhI CCWWGG 3 cut(s) 204, 711, 732
Esp3I CGTCTC 1 cut(s) 952
FaeI CATG 4 cut(s) 62, 251, 736, 926
FaqI GGGAC 1 cut(s) 714
FatI CATG 4 cut(s) 58, 247, 732, 922
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 2 cut(s) 142, 349
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 4 cut(s) 399, 405, 865, 1074
FriOI GRGCYC 3 cut(s) 550, 909, 1090
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 3 cut(s) 327, 807, 1026
GlaI GCGC 1 cut(s) 1044
GluI GCNGC 1 cut(s) 609
GsuI CTGGAG 3 cut(s) 302, 482, 564
HaeII RGCGCY 1 cut(s) 1046
HaeIII GGCC 1 cut(s) 907
HapII CCGG 2 cut(s) 882, 1013
HhaI GCGC 1 cut(s) 1045
Hin1II CATG 4 cut(s) 62, 251, 736, 926
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HinfI GANTC 3 cut(s) 226, 284, 785
HpaII CCGG 2 cut(s) 882, 1013
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 332, 784
Hpy188I TCNGA 6 cut(s) 139, 154, 289, 859, 957, 1116
Hpy188III TCNNGA 4 cut(s) 281, 482, 543, 659
Hpy8I GTNNAC 2 cut(s) 332, 784
HpyAV CCTTC 5 cut(s) 171, 361, 501, 763, 920
HpyCH4III ACNGT 2 cut(s) 278, 963
HpyCH4IV ACGT 3 cut(s) 195, 619, 1125
HpyCH4V TGCA 5 cut(s) 24, 127, 412, 707, 967
HpyF3I CTNAG 5 cut(s) 222, 269, 447, 856, 987
HpySE526I ACGT 3 cut(s) 195, 619, 1125
Hsp92II CATG 4 cut(s) 62, 251, 736, 926
HspAI GCGC 1 cut(s) 1043
Ksp22I TGATCA 2 cut(s) 142, 349
Kzo9I GATC 5 cut(s) 109, 142, 157, 349, 810
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 5 cut(s) 501, 545, 661, 821, 1085
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 1107
MaeI CTAG 3 cut(s) 327, 807, 1026
MaeII ACGT 3 cut(s) 195, 619, 1125
MaeIII GTNAC 3 cut(s) 213, 615, 1181
MalI GATC 5 cut(s) 111, 144, 159, 351, 812
MbiI CCGCTC 1 cut(s) 824
MboI GATC 5 cut(s) 109, 142, 157, 349, 810
MfeI CAATTG 1 cut(s) 942
MhlI GDGCHC 4 cut(s) 550, 909, 933, 1090
MlyI GAGTC 3 cut(s) 235, 293, 779
MmeI TCCRAC 2 cut(s) 943, 1137
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 4 cut(s) 750, 830, 869, 1077
MslI CAYNNNNRTG 2 cut(s) 407, 1099
MspI CCGG 2 cut(s) 882, 1013
MspR9I CCNGG 2 cut(s) 693, 1013
MunI CAATTG 1 cut(s) 942
MvaI CCWGG 1 cut(s) 693
NciI CCSGG 1 cut(s) 1013
NcoI CCATGG 1 cut(s) 732
NdeI CATATG 1 cut(s) 724
NdeII GATC 5 cut(s) 109, 142, 157, 349, 810
NlaIII CATG 4 cut(s) 62, 251, 736, 926
NlaIV GGNNCC 4 cut(s) 577, 730, 907, 1011
NmuCI GTSAC 1 cut(s) 1181
NspV TTCGAA 2 cut(s) 75, 365
PaeR7I CTCGAG 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 851
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 3 cut(s) 234, 292, 779
PpsI GAGTC 3 cut(s) 234, 292, 779
Psp124BI GAGCTC 2 cut(s) 550, 1090
Psp1406I AACGTT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 4 cut(s) 577, 730, 907, 1011
PspOMI GGGCCC 1 cut(s) 905
PspPI GGNCC 5 cut(s) 208, 728, 905, 906, 1009
PspXI VCTCGAGB 1 cut(s) 934
PsrI GAACNNNNNNTAC 2 cut(s) 964, 996
PstNI CAGNNNCTG 2 cut(s) 692, 1120
RsaI GTAC 3 cut(s) 325, 992, 1124
RsaNI GTAC 3 cut(s) 324, 991, 1123
RseI CAYNNNNRTG 2 cut(s) 407, 1099
SacI GAGCTC 2 cut(s) 550, 1090
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 4 cut(s) 750, 830, 869, 1077
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 5 cut(s) 109, 142, 157, 349, 810
Sau96I GGNCC 5 cut(s) 208, 728, 905, 906, 1009
ScaI AGTACT 1 cut(s) 325
SchI GAGTC 3 cut(s) 235, 293, 779
ScrFI CCNGG 2 cut(s) 693, 1013
SduI GDGCHC 4 cut(s) 550, 909, 933, 1090
SfaNI GCATC 1 cut(s) 1107
SfcI CTRYAG 2 cut(s) 235, 1032
Sfr274I CTCGAG 1 cut(s) 934
SfuI TTCGAA 2 cut(s) 75, 365
SinI GGWCC 3 cut(s) 208, 728, 1009
SlaI CTCGAG 1 cut(s) 934
SmiMI CAYNNNNRTG 2 cut(s) 407, 1099
SmlI CTYRAG 2 cut(s) 509, 934
SmoI CTYRAG 2 cut(s) 509, 934
SpeI ACTAGT 1 cut(s) 326
SsiI CCGC 1 cut(s) 824
SspMI CTAG 3 cut(s) 327, 807, 1026
SstI GAGCTC 2 cut(s) 550, 1090
StyD4I CCNGG 2 cut(s) 691, 1011
StyI CCWWGG 3 cut(s) 204, 711, 732
TaaI ACNGT 2 cut(s) 278, 963
TaiI ACGT 3 cut(s) 198, 622, 1128
TaqI TCGA 7 cut(s) 75, 102, 305, 365, 565, 674, 935
TatI WGTACW 2 cut(s) 323, 990
Tru1I TTAA 4 cut(s) 750, 830, 869, 1077
Tru9I TTAA 4 cut(s) 750, 830, 869, 1077
TscAI CASTG 1 cut(s) 1101
TseFI GTSAC 1 cut(s) 1181
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 1181
TspDTI ATGAA 6 cut(s) 99, 171, 542, 867, 878, 939
TspRI CASTG 1 cut(s) 1101
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 3 cut(s) 208, 728, 1009
XapI RAATTY 2 cut(s) 64, 1193
XhoI CTCGAG 1 cut(s) 934
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 3 cut(s) 327, 807, 1026
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.