Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

29920126 .. 29923190

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G322500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCTTGCCCATTCAAATCATATATGAAAACAAAAGTTTCTTGGGTTTTTATAAGCAAGAAAGGATTTTTATTCGTTTTTCTCAGGGAAAAGAGAAACGTCGTTAACAAATGGTTGGACAGCAACTTTGTTTTCTTCTTCTTCTTTAGTCTTCTTTTAAGTTGTAATCTGAAGCTGTCTACTAACTTCTTAGTTTCGTACTGGATACACCCGCAGAATAGTCAAGCAATCAGTGACTTGCCAATTTCTAGATGTGATGCACAAATTAGCATGGAGGATAAAGTCTCTTGCTTGATTGCTTTACAGACTAGGACCACTTTCTACGAAATTGAACATGGCTTGATGGCCTTGCTGAGAGACTGTTTGGAGTCAGAACGTGGAAATACAACCAGTATTGTGTCCGGTTATATTGATCATTTTCAGAGCATTCCATCTGAGGACGTTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCACTTGCTTATGCAAAGGCACGAAGCTCGGGAGGTTTTATTTGGTGGTTGGGGATTTGTTCCTGATATTCCATCTCTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGAACTTGGCTCTGATCATTTTGCTAATAATATTTATGGCTCAAAAAAATGGATTGGAACTACTGAATGTGCTGCCCTTTTCCGTTCTTTTGGGCTTCGAGCAAGAATCGTAGATTTTGGTCCCAAGGAACTTGAATCATTTTATCCTTTGCTTCCTGGTTCAAGTCTTGGGAAAGAAGTAAAGAGAATACATAATGGCGGAAAGAGGAAAGCAATTCAGGTTTGTGGCCCGATGGATAGGTATCTATTGGCAAGGAATCATGATGTTTCCCAAGCAAGTTCCAGTGGGGATGAAAAGTCTGGATGTTCTAGTATTCCTCTTGGTGACTCGTTGGGTAGCAAAAGTAATGAGAATTTGGGAAATAAGTTTACAAGAAATAGCAAGGGTCATCAGGTTCTCATTGATTGGATCTGGAACTATTTTTCTGATAAAAATTTTACCAAATCTGGCAATCGTCAGGTTGTTGTCAGTGACAAAACACCCTTGTACTTCCAACACGATGGACATTCGAGAACGGTTGTTGGGATTCAAGTCAAACATCAACATAATGGGATGCAGCAGCACAATCTCTTAATATTGGACCCTGGCCATAGAACAGCAGATCTGGAAAGATCACTGAAACAAAAGGTCGGATGGCAGAAGTTCATCAAAAGAGGGGTTCACACACTGAAAAAGCCACAGTACCAGTTGTGTTATATTGATACTGGAATAGCAAATCGGGAGGAAGTGGAGTTGCTCAAGACAATAGAAAGTGTTTTTCTGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

458

Amino Acids

52.25

Weight (kDa)

9.01

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	2 cut(s)	212, 801
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	1 cut(s)	1189
AcsI	RAATTY	2 cut(s)	955, 1036
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	3 cut(s)	200, 1091, 1286
AgsI	TTSAA	5 cut(s)	16, 332, 737, 765, 1133
AjnI	CCWGG	2 cut(s)	757, 1186
AluBI	AGCT	3 cut(s)	175, 483, 512
AluI	AGCT	3 cut(s)	175, 483, 512
Alw26I	GTCTC	2 cut(s)	289, 351
AlwI	GGATC	1 cut(s)	1019
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	3 cut(s)	345, 829, 1189
ApeKI	GCWGC	3 cut(s)	674, 1159, 1162
ApoI	RAATTY	2 cut(s)	955, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspS9I	GGNCC	4 cut(s)	312, 722, 830, 1183
AsuHPI	GGTGA	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	3 cut(s)	312, 722, 1183
BalI	TGGCCA	1 cut(s)	1191
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	661, 1171, 1174
BccI	CCATC	7 cut(s)	337, 439, 564, 565, 829, 1097, 1230
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	759, 1188
BciVI	GTATCC	1 cut(s)	198
BclI	TGATCA	2 cut(s)	412, 616
BcoDI	GTCTC	2 cut(s)	289, 351
BfaI	CTAG	4 cut(s)	249, 309, 912, 1372
BfuI	GTATCC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	1204
BisI	GCNGC	3 cut(s)	675, 1160, 1163
BlpI	GCTNAGC	1 cut(s)	479
BlsI	GCNGC	3 cut(s)	676, 1161, 1164
Bme1390I	CCNGG	2 cut(s)	759, 1188
Bme18I	GGWCC	3 cut(s)	312, 722, 1183
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	4 cut(s)	312, 722, 830, 1183
BmiI	GGNNCC	2 cut(s)	724, 1185
BmrFI	CCNGG	2 cut(s)	759, 1188
BmsI	GCATC	2 cut(s)	247, 1146
BpiI	GAAGAC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	596, 1325
BsaBI	GATNNNNATC	1 cut(s)	843
BsaJI	CCNNGG	2 cut(s)	726, 1186
BsaWI	WCCGGW	1 cut(s)	401
Bse1I	ACTGG	5 cut(s)	206, 390, 885, 1288, 1312
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	759, 1188
BseDI	CCNNGG	2 cut(s)	726, 1186
BseGI	GGATG	5 cut(s)	468, 898, 911, 1161, 1241
BseJI	GATNNNNATC	1 cut(s)	843
BseMII	CTCAG	3 cut(s)	97, 344, 426
BseNI	ACTGG	5 cut(s)	206, 390, 885, 1288, 1312
BseXI	GCAGC	3 cut(s)	661, 1171, 1174
BshFI	GGCC	3 cut(s)	347, 831, 1191
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	289, 351
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	347, 831, 1191
BsoBI	CYCGRG	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
Bsp1720I	GCTNAGC	1 cut(s)	479
BspACI	CCGC	2 cut(s)	212, 801
BspANI	GGCC	3 cut(s)	347, 831, 1191
BspCNI	CTCAG	3 cut(s)	96, 345, 427
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	2 cut(s)	724, 1185
BspPI	GGATC	1 cut(s)	1019
BsrI	ACTGG	5 cut(s)	206, 390, 885, 1288, 1312
BssECI	CCNNGG	2 cut(s)	726, 1186
BssMI	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	2 cut(s)	759, 1188
Bst4CI	ACNGT	3 cut(s)	362, 1120, 1284
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	5 cut(s)	83, 190, 353, 435, 479
BstF5I	GGATG	5 cut(s)	468, 898, 911, 1161, 1241
BstKTI	GATC	5 cut(s)	415, 619, 1014, 1207, 1217
BstMAI	GTCTC	2 cut(s)	289, 351
BstMBI	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
BstNI	CCWGG	2 cut(s)	759, 1188
BstSCI	CCNGG	2 cut(s)	757, 1186
BstV1I	GCAGC	3 cut(s)	661, 1171, 1174
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	1011, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1103
BstYI	RGATCY	2 cut(s)	1011, 1204
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	347, 831, 1191
BtsCI	GGATG	5 cut(s)	468, 898, 911, 1161, 1241
BtsIMutI	CAGTG	5 cut(s)	238, 892, 1078, 1217, 1268
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	862
Cfr13I	GGNCC	4 cut(s)	312, 722, 830, 1183
Csp6I	GTAC	3 cut(s)	199, 1090, 1285
CviAII	CATG	3 cut(s)	271, 335, 863
CviQI	GTAC	3 cut(s)	199, 1090, 1285
DdeI	CTNAG	5 cut(s)	83, 190, 353, 435, 479
DpnI	GATC	5 cut(s)	414, 618, 1013, 1206, 1216
DpnII	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
EaeI	YGGCCR	1 cut(s)	1189
EciI	GGCGGA	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	726
Eco47I	GGWCC	3 cut(s)	312, 722, 1183
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	757, 1186
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	3 cut(s)	274, 338, 866
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	270, 334, 862
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	2 cut(s)	412, 616
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	675, 1160, 1163
FokI	GGATG	5 cut(s)	455, 905, 918, 1168, 1248
Fsp4HI	GCNGC	3 cut(s)	675, 1160, 1163
FspBI	CTAG	4 cut(s)	249, 309, 912, 1372
GluI	GCNGC	3 cut(s)	675, 1160, 1163
HaeIII	GGCC	3 cut(s)	347, 831, 1191
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	3 cut(s)	274, 338, 866
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	6 cut(s)	368, 708, 737, 859, 929, 1129
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	4 cut(s)	106, 180, 972, 1264
Hpy188I	TCNGA	7 cut(s)	171, 373, 423, 436, 616, 1030, 1235
Hpy8I	GTNNAC	4 cut(s)	106, 180, 972, 1264
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	3 cut(s)	362, 1120, 1284
HpyCH4IV	ACGT	3 cut(s)	99, 376, 441
HpyCH4V	TGCA	3 cut(s)	260, 499, 1159
HpyF3I	CTNAG	5 cut(s)	83, 190, 353, 435, 479
HpySE526I	ACGT	3 cut(s)	99, 376, 441
Hsp92II	CATG	3 cut(s)	274, 338, 866
Ksp22I	TGATCA	2 cut(s)	412, 616
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	3 cut(s)	661, 1171, 1174
LweI	GCATC	2 cut(s)	247, 1146
MaeI	CTAG	4 cut(s)	249, 309, 912, 1372
MaeII	ACGT	3 cut(s)	99, 376, 441
MaeIII	GTNAC	4 cut(s)	233, 464, 926, 1073
MalI	GATC	5 cut(s)	414, 618, 1013, 1206, 1216
MboI	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
MboII	GAAGA	4 cut(s)	127, 130, 133, 143
MflI	RGATCY	2 cut(s)	1011, 1204
MlsI	TGGCCA	1 cut(s)	1191
MluCI	AATT	6 cut(s)	243, 264, 327, 816, 955, 1036
MluNI	TGGCCA	1 cut(s)	1191
MlyI	GAGTC	2 cut(s)	377, 923
MmeI	TCCRAC	3 cut(s)	96, 1120, 1213
MnlI	CCTC	7 cut(s)	268, 430, 511, 801, 930, 1250, 1318
Mox20I	TGGCCA	1 cut(s)	1191
MscI	TGGCCA	1 cut(s)	1191
MseI	TTAA	3 cut(s)	105, 158, 1175
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	1191
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	759, 1188
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	759, 1188
NdeII	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
NlaIII	CATG	3 cut(s)	274, 338, 866
NlaIV	GGNNCC	2 cut(s)	724, 1185
NmuCI	GTSAC	3 cut(s)	233, 926, 1073
PagI	TCATGA	1 cut(s)	862
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	708, 737, 859, 1129
PkrI	GCNGC	3 cut(s)	676, 1161, 1164
PleI	GAGTC	2 cut(s)	376, 923
PpsI	GAGTC	2 cut(s)	376, 923
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	757, 1186
PspGI	CCWGG	2 cut(s)	757, 1186
PspN4I	GGNNCC	2 cut(s)	724, 1185
PspPI	GGNCC	4 cut(s)	312, 722, 830, 1183
PsuI	RGATCY	2 cut(s)	1011, 1204
RsaI	GTAC	3 cut(s)	200, 1091, 1286
RsaNI	GTAC	3 cut(s)	199, 1090, 1285
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	105, 158, 1175
SatI	GCNGC	3 cut(s)	675, 1160, 1163
Sau3AI	GATC	5 cut(s)	412, 616, 1011, 1204, 1214
Sau96I	GGNCC	4 cut(s)	312, 722, 830, 1183
SchI	GAGTC	2 cut(s)	377, 923
ScrFI	CCNGG	2 cut(s)	759, 1188
SfaNI	GCATC	2 cut(s)	247, 1146
SinI	GGWCC	3 cut(s)	312, 722, 1183
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	575, 1340
SmoI	CTYRAG	2 cut(s)	575, 1340
Sse9I	AATT	6 cut(s)	243, 264, 327, 816, 955, 1036
SsiI	CCGC	2 cut(s)	212, 801
SspI	AATATT	2 cut(s)	634, 1179
SspMI	CTAG	4 cut(s)	249, 309, 912, 1372
StyD4I	CCNGG	2 cut(s)	757, 1186
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	3 cut(s)	362, 1120, 1284
TaiI	ACGT	3 cut(s)	102, 379, 444
TaqI	TCGA	2 cut(s)	700, 1112
TasI	AATT	6 cut(s)	243, 264, 327, 816, 955, 1036
TatI	WGTACW	1 cut(s)	1089
TfiI	GAWTC	4 cut(s)	708, 737, 859, 1129
Tru1I	TTAA	3 cut(s)	105, 158, 1175
Tru9I	TTAA	3 cut(s)	105, 158, 1175
TscAI	CASTG	5 cut(s)	238, 892, 1078, 1224, 1275
TseFI	GTSAC	3 cut(s)	233, 926, 1073
TseI	GCWGC	3 cut(s)	674, 1159, 1162
Tsp45I	GTSAC	3 cut(s)	233, 926, 1073
TspDTI	ATGAA	4 cut(s)	41, 618, 909, 1237
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	5 cut(s)	238, 892, 1078, 1224, 1275
VpaK11BI	GGWCC	3 cut(s)	312, 722, 1183
XapI	RAATTY	2 cut(s)	955, 1036
XbaI	TCTAGA	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	4 cut(s)	249, 309, 912, 1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.