Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Reverse (-)

67823174 .. 67825243

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGATTCTTCTTCGTCTTGTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGTTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCATTCTCTTCCTGGTTCAAGGCTTGGGCAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGCAAGTTCCAGTTGCCGTGAAAAGTCAAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAAGTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACGGGCAATCACCAGGTCATTGTTAGTGACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACGGCAGACCTGGAAAGATTGCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTTCACACACTGAGAAAGCCACAGTACCAGTTGTGTTATATTGATCCTGGCATTTCAAGTGGAGATGAAGTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

440

Amino Acids

49.88

Weight (kDa)

6.81

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	116 - 225	3.2e-26	Peptidase family C78
Peptidase_C78	PF07910	307 - 415	1.2e-15	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	903, 1199
AclI	AACGTT	1 cut(s)	987
AclWI	GGATC	2 cut(s)	968, 1247
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	1 cut(s)	1190
AfaI	GTAC	2 cut(s)	1040, 1235
AfiI	CCNNNNNNNGG	1 cut(s)	1074
AjnI	CCWGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	2 cut(s)	432, 557
AluI	AGCT	2 cut(s)	432, 557
Alw26I	GTCTC	2 cut(s)	177, 452
AlwI	GGATC	2 cut(s)	968, 1247
Ama87I	CYCGRG	1 cut(s)	462
ApeKI	GCWGC	5 cut(s)	245, 554, 623, 646, 1108
ApoI	RAATTY	1 cut(s)	582
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	3 cut(s)	671, 779, 1132
AsuHPI	GGTGA	2 cut(s)	887, 998
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	3 cut(s)	671, 779, 1132
AxyI	CCTNAGG	1 cut(s)	675
BbvI	GCAGC	5 cut(s)	232, 566, 610, 633, 1120
BceAI	ACGGC	3 cut(s)	80, 825, 1164
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	177, 452
BfaI	CTAG	4 cut(s)	258, 327, 864, 1321
BfmI	CTRYAG	1 cut(s)	1296
BisI	GCNGC	5 cut(s)	246, 555, 624, 647, 1109
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	5 cut(s)	247, 556, 625, 648, 1110
Bme1390I	CCNGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
Bme18I	GGWCC	3 cut(s)	671, 779, 1132
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	3 cut(s)	671, 779, 1132
BmiI	GGNNCC	2 cut(s)	144, 1134
BmrFI	CCNGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
BmsI	GCATC	2 cut(s)	541, 1095
BoxI	GACNNNNGTC	1 cut(s)	1137
Bpu1102I	GCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	545, 1274
BsaJI	CCNNGG	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	1263, 1293
Bsc4I	CCNNNNNNNGG	1 cut(s)	1074
Bse1I	ACTGG	3 cut(s)	108, 834, 1237
Bse21I	CCTNAGG	1 cut(s)	675
BseBI	CCWGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
BseDI	CCNNGG	1 cut(s)	1135
BseGI	GGATG	5 cut(s)	47, 158, 417, 1110, 1190
BseLI	CCNNNNNNNGG	1 cut(s)	1074
BseMII	CTCAG	3 cut(s)	293, 375, 1211
BseNI	ACTGG	3 cut(s)	108, 834, 1237
BseRI	GAGGAG	1 cut(s)	1221
BseXI	GCAGC	5 cut(s)	232, 566, 610, 633, 1120
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	1074
BsmAI	GTCTC	2 cut(s)	177, 452
BsmI	GAATGC	2 cut(s)	375, 1057
BsoBI	CYCGRG	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	361, 380, 565, 960, 1252
Bsp1720I	GCTNAGC	1 cut(s)	428
BspCNI	CTCAG	3 cut(s)	294, 376, 1212
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	2 cut(s)	144, 1134
BspPI	GGATC	2 cut(s)	968, 1247
BsrI	ACTGG	3 cut(s)	108, 834, 1237
BssECI	CCNNGG	1 cut(s)	1135
BssMI	GATC	5 cut(s)	361, 380, 565, 960, 1252
Bst2UI	CCWGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
Bst4CI	ACNGT	3 cut(s)	43, 1233, 1297
Bst6I	CTCTTC	2 cut(s)	708, 749
BstC8I	GCNNGC	3 cut(s)	69, 559, 651
BstDEI	CTNAG	5 cut(s)	302, 384, 428, 675, 1220
BstF5I	GGATG	5 cut(s)	47, 158, 417, 1110, 1190
BstKTI	GATC	5 cut(s)	364, 383, 568, 963, 1255
BstMAI	GTCTC	2 cut(s)	177, 452
BstMBI	GATC	5 cut(s)	361, 380, 565, 960, 1252
BstNI	CCWGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
BstNSI	RCATGY	1 cut(s)	71
BstPAI	GACNNNNGTC	1 cut(s)	1137
BstSCI	CCNGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
BstSFI	CTRYAG	1 cut(s)	1296
BstV1I	GCAGC	5 cut(s)	232, 566, 610, 633, 1120
BstX2I	RGATCY	1 cut(s)	960
BstYI	RGATCY	1 cut(s)	960
Bsu36I	CCTNAGG	1 cut(s)	675
BtsCI	GGATG	5 cut(s)	47, 158, 417, 1110, 1190
BtsIMutI	CAGTG	1 cut(s)	1217
Cac8I	GCNNGC	3 cut(s)	69, 559, 651
CciI	TCATGA	1 cut(s)	811
Cfr13I	GGNCC	3 cut(s)	671, 779, 1132
CsiI	ACCWGGT	1 cut(s)	1008
Csp6I	GTAC	2 cut(s)	1039, 1234
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	8 cut(s)	68, 163, 206, 220, 272, 812, 952, 1049
CviQI	GTAC	2 cut(s)	1039, 1234
DdeI	CTNAG	5 cut(s)	302, 384, 428, 675, 1220
DpnI	GATC	5 cut(s)	363, 382, 567, 962, 1254
DpnII	GATC	5 cut(s)	361, 380, 565, 960, 1252
Eam1104I	CTCTTC	2 cut(s)	708, 749
EarI	CTCTTC	2 cut(s)	708, 749
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	3 cut(s)	671, 779, 1132
Eco57I	CTGAAG	1 cut(s)	1190
Eco81I	CCTNAGG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	462
EcoRII	CCWGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
EcoRV	GATATC	1 cut(s)	502
FaeI	CATG	8 cut(s)	71, 166, 209, 223, 275, 815, 955, 1052
FatI	CATG	8 cut(s)	67, 162, 205, 219, 271, 811, 951, 1048
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	5 cut(s)	246, 555, 624, 647, 1109
FokI	GGATG	5 cut(s)	34, 145, 404, 1117, 1197
Fsp4HI	GCNGC	5 cut(s)	246, 555, 624, 647, 1109
FspBI	CTAG	4 cut(s)	258, 327, 864, 1321
GluI	GCNGC	5 cut(s)	246, 555, 624, 647, 1109
GsaI	CCCAGC	1 cut(s)	130
Hin1II	CATG	8 cut(s)	71, 166, 209, 223, 275, 815, 955, 1052
HinfI	GANTC	6 cut(s)	5, 389, 460, 808, 878, 1078
HphI	GGTGA	2 cut(s)	887, 998
Hpy166II	GTNNAC	2 cut(s)	779, 1213
Hpy188I	TCNGA	4 cut(s)	182, 372, 385, 565
Hpy188III	TCNNGA	9 cut(s)	464, 497, 733, 812, 909, 964, 1062, 1291, 1313
Hpy8I	GTNNAC	2 cut(s)	779, 1213
HpyAV	CCTTC	4 cut(s)	37, 156, 275, 1165
HpyCH4III	ACNGT	3 cut(s)	43, 1233, 1297
HpyCH4IV	ACGT	1 cut(s)	987
HpyCH4V	TGCA	4 cut(s)	448, 485, 554, 1108
HpyF3I	CTNAG	5 cut(s)	302, 384, 428, 675, 1220
HpySE526I	ACGT	1 cut(s)	987
Hsp92II	CATG	8 cut(s)	71, 166, 209, 223, 275, 815, 955, 1052
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	361, 380, 565, 960, 1252
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	5 cut(s)	232, 566, 610, 633, 1120
LweI	GCATC	2 cut(s)	541, 1095
MabI	ACCWGGT	1 cut(s)	1008
MaeI	CTAG	4 cut(s)	258, 327, 864, 1321
MaeII	ACGT	1 cut(s)	987
MaeIII	GTNAC	5 cut(s)	77, 413, 983, 988, 1022
MalI	GATC	5 cut(s)	363, 382, 567, 962, 1254
MboI	GATC	5 cut(s)	361, 380, 565, 960, 1252
MboII	GAAGA	5 cut(s)	3, 104, 141, 695, 766
MflI	RGATCY	1 cut(s)	960
MluCI	AATT	7 cut(s)	276, 582, 765, 898, 904, 967, 1125
MlyI	GAGTC	2 cut(s)	454, 817
MnlI	CCTC	8 cut(s)	61, 79, 217, 379, 721, 750, 1175, 1199
MseI	TTAA	3 cut(s)	819, 975, 1124
MslI	CAYNNNNRTG	3 cut(s)	422, 747, 873
MspA1I	CMGCKG	1 cut(s)	557
MspR9I	CCNGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
Mva1269I	GAATGC	2 cut(s)	375, 1057
MvaI	CCWGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
NdeII	GATC	5 cut(s)	361, 380, 565, 960, 1252
NlaIII	CATG	8 cut(s)	71, 166, 209, 223, 275, 815, 955, 1052
NlaIV	GGNNCC	2 cut(s)	144, 1134
NmuCI	GTSAC	2 cut(s)	77, 1022
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	462
PagI	TCATGA	1 cut(s)	811
PctI	GAATGC	2 cut(s)	375, 1057
PfeI	GAWTC	4 cut(s)	5, 389, 878, 1078
PkrI	GCNGC	5 cut(s)	247, 556, 625, 648, 1110
PleI	GAGTC	2 cut(s)	454, 816
PpsI	GAGTC	2 cut(s)	454, 816
PshAI	GACNNNNGTC	1 cut(s)	1137
PsiI	TTATAA	2 cut(s)	903, 1199
Psp1406I	AACGTT	1 cut(s)	987
Psp6I	CCWGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
PspN4I	GGNNCC	2 cut(s)	144, 1134
PspPI	GGNCC	3 cut(s)	671, 779, 1132
PsuI	RGATCY	1 cut(s)	960
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	1040, 1235
RsaNI	GTAC	2 cut(s)	1039, 1234
RseI	CAYNNNNRTG	3 cut(s)	422, 747, 873
SaqAI	TTAA	3 cut(s)	819, 975, 1124
SatI	GCNGC	5 cut(s)	246, 555, 624, 647, 1109
Sau3AI	GATC	5 cut(s)	361, 380, 565, 960, 1252
Sau96I	GGNCC	3 cut(s)	671, 779, 1132
SchI	GAGTC	2 cut(s)	454, 817
ScrFI	CCNGG	6 cut(s)	242, 708, 1010, 1137, 1157, 1257
SexAI	ACCWGGT	1 cut(s)	1008
SfaNI	GCATC	2 cut(s)	541, 1095
SfcI	CTRYAG	1 cut(s)	1296
Sfr274I	CTCGAG	1 cut(s)	462
SinI	GGWCC	3 cut(s)	671, 779, 1132
SlaI	CTCGAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	3 cut(s)	422, 747, 873
SmlI	CTYRAG	3 cut(s)	462, 524, 1289
SmoI	CTYRAG	3 cut(s)	462, 524, 1289
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	7 cut(s)	276, 582, 765, 898, 904, 967, 1125
SspMI	CTAG	4 cut(s)	258, 327, 864, 1321
StyD4I	CCNGG	6 cut(s)	240, 706, 1008, 1135, 1155, 1255
TaaI	ACNGT	3 cut(s)	43, 1233, 1297
TaiI	ACGT	1 cut(s)	990
TaqI	TCGA	4 cut(s)	379, 463, 684, 1061
TaqII	GACCGA	1 cut(s)	796
TasI	AATT	7 cut(s)	276, 582, 765, 898, 904, 967, 1125
TatI	WGTACW	1 cut(s)	1038
TfiI	GAWTC	4 cut(s)	5, 389, 878, 1078
Tru1I	TTAA	3 cut(s)	819, 975, 1124
Tru9I	TTAA	3 cut(s)	819, 975, 1124
TscAI	CASTG	1 cut(s)	1224
TseFI	GTSAC	2 cut(s)	77, 1022
TseI	GCWGC	5 cut(s)	245, 554, 623, 646, 1108
Tsp45I	GTSAC	2 cut(s)	77, 1022
TspDTI	ATGAA	4 cut(s)	179, 194, 288, 1290
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	1 cut(s)	1224
VpaK11BI	GGWCC	3 cut(s)	671, 779, 1132
XapI	RAATTY	1 cut(s)	582
XceI	RCATGY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	462
XspI	CTAG	4 cut(s)	258, 327, 864, 1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.