Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

68102144 .. 68104845

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG466500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGTGCTATGGATTCTTCTTCTTCTTCGTCTTGTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAAGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCCTTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGTGAGTTCCAGTTGCCTTGAAAAGTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGAGTAGGAAAACTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACCGGCAATCACCGGTTCATTGTTAGTGACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATGTAATCTTCTGTCCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

392

Amino Acids

44.18

Weight (kDa)

6.35

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	121 - 230	2.9e-26	Peptidase family C78
Peptidase_C78	PF07910	312 - 386	7.9e-11	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AclI	AACGTT	1 cut(s)	1002
AclWI	GGATC	1 cut(s)	983
AcsI	RAATTY	1 cut(s)	597
AfaI	GTAC	1 cut(s)	1055
AfiI	CCNNNNNNNGG	1 cut(s)	1089
AgeI	ACCGGT	1 cut(s)	1023
AgsI	TTSAA	9 cut(s)	77, 107, 296, 610, 729, 860, 939, 1061, 1097
AjnI	CCWGG	3 cut(s)	255, 721, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	2 cut(s)	447, 572
AluI	AGCT	2 cut(s)	447, 572
Alw26I	GTCTC	2 cut(s)	192, 467
AlwI	GGATC	1 cut(s)	983
Ama87I	CYCGRG	1 cut(s)	477
ApeKI	GCWGC	5 cut(s)	260, 569, 638, 661, 1123
ApoI	RAATTY	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AsiGI	ACCGGT	1 cut(s)	1023
AspS9I	GGNCC	3 cut(s)	686, 794, 1147
AsuHPI	GGTGA	2 cut(s)	902, 1013
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	3 cut(s)	686, 794, 1147
AxyI	CCTNAGG	1 cut(s)	690
BbvI	GCAGC	5 cut(s)	247, 581, 625, 648, 1135
BccI	CCATC	9 cut(s)	70, 181, 301, 528, 529, 609, 793, 989, 1061
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	3 cut(s)	257, 723, 1152
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	192, 467
BfaI	CTAG	3 cut(s)	273, 342, 879
BisI	GCNGC	5 cut(s)	261, 570, 639, 662, 1124
BlpI	GCTNAGC	1 cut(s)	443
BlsI	GCNGC	5 cut(s)	262, 571, 640, 663, 1125
Bme1390I	CCNGG	3 cut(s)	257, 723, 1152
Bme18I	GGWCC	3 cut(s)	686, 794, 1147
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	686, 794, 1147
BmiI	GGNNCC	2 cut(s)	159, 1149
BmrFI	CCNGG	3 cut(s)	257, 723, 1152
BmsI	GCATC	2 cut(s)	556, 1110
BoxI	GACNNNNGTC	1 cut(s)	1152
Bpu1102I	GCTNAGC	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	1150
BsaWI	WCCGGW	1 cut(s)	1023
Bsc4I	CCNNNNNNNGG	1 cut(s)	1089
Bse118I	RCCGGY	2 cut(s)	1013, 1023
Bse1I	ACTGG	2 cut(s)	123, 849
Bse21I	CCTNAGG	1 cut(s)	690
BseBI	CCWGG	3 cut(s)	257, 723, 1152
BseDI	CCNNGG	1 cut(s)	1150
BseGI	GGATG	4 cut(s)	62, 173, 432, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	1089
BseMII	CTCAG	2 cut(s)	308, 390
BseNI	ACTGG	2 cut(s)	123, 849
BseXI	GCAGC	5 cut(s)	247, 581, 625, 648, 1135
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	519
BshTI	ACCGGT	1 cut(s)	1023
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	1014, 1024
BslFI	GGGAC	1 cut(s)	1155
BslI	CCNNNNNNNGG	1 cut(s)	1089
BsmAI	GTCTC	2 cut(s)	192, 467
BsmFI	GGGAC	1 cut(s)	1155
BsmI	GAATGC	2 cut(s)	390, 1072
BsoBI	CYCGRG	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	376, 395, 580, 975
Bsp1720I	GCTNAGC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	309, 391
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	2 cut(s)	159, 1149
BspPI	GGATC	1 cut(s)	983
BsrFI	RCCGGY	2 cut(s)	1013, 1023
BsrI	ACTGG	2 cut(s)	123, 849
BssAI	RCCGGY	2 cut(s)	1013, 1023
BssECI	CCNNGG	1 cut(s)	1150
BssMI	GATC	4 cut(s)	376, 395, 580, 975
Bst2UI	CCWGG	3 cut(s)	257, 723, 1152
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	723, 735, 764
BstC8I	GCNNGC	3 cut(s)	84, 574, 666
BstDEI	CTNAG	4 cut(s)	317, 399, 443, 690
BstF5I	GGATG	4 cut(s)	62, 173, 432, 1125
BstKTI	GATC	4 cut(s)	379, 398, 583, 978
BstMAI	GTCTC	2 cut(s)	192, 467
BstMBI	GATC	4 cut(s)	376, 395, 580, 975
BstNI	CCWGG	3 cut(s)	257, 723, 1152
BstNSI	RCATGY	1 cut(s)	86
BstPAI	GACNNNNGTC	1 cut(s)	1152
BstSCI	CCNGG	3 cut(s)	255, 721, 1150
BstV1I	GCAGC	5 cut(s)	247, 581, 625, 648, 1135
BstX2I	RGATCY	1 cut(s)	975
BstYI	RGATCY	1 cut(s)	975
Bsu36I	CCTNAGG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	62, 173, 432, 1125
Cac8I	GCNNGC	3 cut(s)	84, 574, 666
CciI	TCATGA	1 cut(s)	826
Cfr10I	RCCGGY	2 cut(s)	1013, 1023
Cfr13I	GGNCC	3 cut(s)	686, 794, 1147
Csp6I	GTAC	1 cut(s)	1054
CspAI	ACCGGT	1 cut(s)	1023
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	9 cut(s)	83, 178, 221, 235, 287, 827, 967, 1064, 1157
CviQI	GTAC	1 cut(s)	1054
DdeI	CTNAG	4 cut(s)	317, 399, 443, 690
DpnI	GATC	4 cut(s)	378, 397, 582, 977
DpnII	GATC	4 cut(s)	376, 395, 580, 975
Eam1104I	CTCTTC	3 cut(s)	723, 735, 764
EarI	CTCTTC	3 cut(s)	723, 735, 764
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	3 cut(s)	686, 794, 1147
Eco81I	CCTNAGG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	3 cut(s)	255, 721, 1150
EcoRV	GATATC	1 cut(s)	517
FaeI	CATG	9 cut(s)	86, 181, 224, 238, 290, 830, 970, 1067, 1160
FaqI	GGGAC	1 cut(s)	1155
FatI	CATG	9 cut(s)	82, 177, 220, 234, 286, 826, 966, 1063, 1156
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	261, 570, 639, 662, 1124
FokI	GGATG	4 cut(s)	49, 160, 419, 1132
Fsp4HI	GCNGC	5 cut(s)	261, 570, 639, 662, 1124
FspBI	CTAG	3 cut(s)	273, 342, 879
GluI	GCNGC	5 cut(s)	261, 570, 639, 662, 1124
GsaI	CCCAGC	1 cut(s)	145
HapII	CCGG	2 cut(s)	1014, 1024
Hin1II	CATG	9 cut(s)	86, 181, 224, 238, 290, 830, 970, 1067, 1160
HinfI	GANTC	6 cut(s)	14, 404, 475, 823, 893, 1093
HpaII	CCGG	2 cut(s)	1014, 1024
HphI	GGTGA	2 cut(s)	902, 1013
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	4 cut(s)	197, 387, 400, 580
Hpy188III	TCNNGA	7 cut(s)	479, 512, 748, 827, 924, 979, 1077
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	4 cut(s)	52, 171, 290, 723
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	4 cut(s)	463, 500, 569, 1123
HpyF3I	CTNAG	4 cut(s)	317, 399, 443, 690
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	9 cut(s)	86, 181, 224, 238, 290, 830, 970, 1067, 1160
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	4 cut(s)	376, 395, 580, 975
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	5 cut(s)	247, 581, 625, 648, 1135
LweI	GCATC	2 cut(s)	556, 1110
MaeI	CTAG	3 cut(s)	273, 342, 879
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	5 cut(s)	92, 428, 998, 1003, 1037
MalI	GATC	4 cut(s)	378, 397, 582, 977
MboI	GATC	4 cut(s)	376, 395, 580, 975
MflI	RGATCY	1 cut(s)	975
MluCI	AATT	7 cut(s)	291, 597, 780, 913, 919, 982, 1140
MlyI	GAGTC	2 cut(s)	469, 832
MnlI	CCTC	6 cut(s)	76, 94, 232, 394, 736, 765
MseI	TTAA	3 cut(s)	834, 990, 1139
MslI	CAYNNNNRTG	3 cut(s)	437, 762, 888
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	1014, 1024
MspR9I	CCNGG	3 cut(s)	257, 723, 1152
Mva1269I	GAATGC	2 cut(s)	390, 1072
MvaI	CCWGG	3 cut(s)	257, 723, 1152
NdeII	GATC	4 cut(s)	376, 395, 580, 975
NlaIII	CATG	9 cut(s)	86, 181, 224, 238, 290, 830, 970, 1067, 1160
NlaIV	GGNNCC	2 cut(s)	159, 1149
NmuCI	GTSAC	2 cut(s)	92, 1037
NspI	RCATGY	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	477
PagI	TCATGA	1 cut(s)	826
PctI	GAATGC	2 cut(s)	390, 1072
PfeI	GAWTC	4 cut(s)	14, 404, 893, 1093
PinAI	ACCGGT	1 cut(s)	1023
PkrI	GCNGC	5 cut(s)	262, 571, 640, 663, 1125
PleI	GAGTC	2 cut(s)	469, 831
PpsI	GAGTC	2 cut(s)	469, 831
PshAI	GACNNNNGTC	1 cut(s)	1152
PsiI	TTATAA	1 cut(s)	918
Psp1406I	AACGTT	1 cut(s)	1002
Psp6I	CCWGG	3 cut(s)	255, 721, 1150
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	255, 721, 1150
PspN4I	GGNNCC	2 cut(s)	159, 1149
PspPI	GGNCC	3 cut(s)	686, 794, 1147
PsuI	RGATCY	1 cut(s)	975
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	1055
RsaNI	GTAC	1 cut(s)	1054
RseI	CAYNNNNRTG	3 cut(s)	437, 762, 888
SaqAI	TTAA	3 cut(s)	834, 990, 1139
SatI	GCNGC	5 cut(s)	261, 570, 639, 662, 1124
Sau3AI	GATC	4 cut(s)	376, 395, 580, 975
Sau96I	GGNCC	3 cut(s)	686, 794, 1147
SchI	GAGTC	2 cut(s)	469, 832
ScrFI	CCNGG	3 cut(s)	257, 723, 1152
SfaNI	GCATC	2 cut(s)	556, 1110
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	3 cut(s)	686, 794, 1147
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	3 cut(s)	437, 762, 888
SmlI	CTYRAG	2 cut(s)	477, 539
SmoI	CTYRAG	2 cut(s)	477, 539
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	7 cut(s)	291, 597, 780, 913, 919, 982, 1140
SspMI	CTAG	3 cut(s)	273, 342, 879
StyD4I	CCNGG	3 cut(s)	255, 721, 1150
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	5 cut(s)	394, 478, 699, 866, 1076
TaqII	GACCGA	1 cut(s)	811
TasI	AATT	7 cut(s)	291, 597, 780, 913, 919, 982, 1140
TatI	WGTACW	1 cut(s)	1053
TfiI	GAWTC	4 cut(s)	14, 404, 893, 1093
Tru1I	TTAA	3 cut(s)	834, 990, 1139
Tru9I	TTAA	3 cut(s)	834, 990, 1139
TseFI	GTSAC	2 cut(s)	92, 1037
TseI	GCWGC	5 cut(s)	260, 569, 638, 661, 1123
Tsp45I	GTSAC	2 cut(s)	92, 1037
TspDTI	ATGAA	4 cut(s)	194, 209, 303, 1018
TspGWI	ACGGA	1 cut(s)	638
VpaK11BI	GGWCC	3 cut(s)	686, 794, 1147
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	477
XspI	CTAG	3 cut(s)	273, 342, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.