Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

36133217 .. 36136001

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1303900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATTATTCGAGTTGCCCGTTCTGTGATTTGACAGTTCTGTCCGCCGAACTTGAAAGGCACGCCAACGGTCACTTTGAGGAGGTTGAGGATGATGAGCTCGATAAGCAACTGGCGAGGGATTTGGAGTTTGCCCAACAGCTTTCTCTCGCTCCTACTGCACCTCCATCAGCCATGAATTTAACAATTGATGGAGACATTAGTATGGAGGAAAAGGTTTCTTGCTTGATTGCTTTACAGACTAGGACTACTTTCCACAAGATTGAAGGTGGCTTAATGGCATTGCTCAGAGGCTGTTTGGAGTTAGAACATGGAAATACAACCACTATTGTGTCCGGTTATATTGATCATTTTCAGAGCATTCAATCAGAGGACAAGGGGTGGGGTTGCGGGTGGCGTAACATCCAAATGCTTAGCTCCCACTTGCTTGTGCAAAGGCAAGAAGCTCGGGAGGTTTTGTTTGGTGGTTCAGGTTTTGTTCCTGATATCCCTTCACTTCAAAGGTGGCTTGAAATTGCTTGGGAAAAGGGTTTTGATACACTTGGTTCTAATCATTTTGCTAACAACATTTATGGATCAAGAAAATGGATTGGAGCTACTGAATGTGCTGCCCTTTTCCGTTCTTTTGGACTTCGAGCAAGGGTAGTGGATTTTGGCCCCAAGGAACTTGAAACATTTTATCCTTCTCTTCCTGGTTCAAGTCTTGGGAAAGAGGTAAAGAGAATACAGGATGGCGGAAAGAGGAAAGCAATCCAGGTTCGTGGCCCGATGGATAGGTATTTGTTGGTAAGGAATCACGATACTACTCAAGCAAGTTCCAGTGGACTTGAAAATTCGGGAGGTTCTAATATCCAGCTTGGTGACTCTATGGGTGGCACAAGTGATGAGATTTCGAGAAATAAGTTTACAAGGAAAAACAACGGTCGTCAGGTTCTCATTGATTGGATCTGGAACTACTTTTCTGATAATAATTTTACCAAATCTGGAAATCATCAGGTCATTGTCAGTGACAAAACACCCTTGTACTTCCAACATGATGGACATTCGAGAACGATTGTTGGGATTCAAGTCAAGCGTCAACATAATGGGATGCTTCAGCACAATCTCTTAATATTAGACCCTGGCCATAGAACGGAAGATCTGGAAAGATCGCTTGGAGAAAAGGTAGGATGGCAGAAGTTTGTAAAAAGAGGGGTTCATACGCTGAAAAAGCCACAGTACCAGTTGTGCTATATCGATCCTGGAATTGCAAGCGGGGAGGAAAAGGAGTTGCTTAAGACAGTGGAAAGCGTCTTTCTTGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

436

Amino Acids

48.91

Weight (kDa)

6.03

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	111 - 221	3.8e-29	Peptidase family C78
Peptidase_C78	PF07910	302 - 410	8.6e-15	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AciI	CCGC	4 cut(s)	45, 390, 735, 1254
AclWI	GGATC	3 cut(s)	583, 953, 1232
AcoI	YGGCCR	1 cut(s)	1123
AcsI	RAATTY	3 cut(s)	178, 832, 1301
AcuI	CTGAAG	1 cut(s)	1079
AfaI	GTAC	2 cut(s)	1025, 1220
AfiI	CCNNNNNNNGG	1 cut(s)	1132
AflII	CTTAAG	1 cut(s)	1274
AjnI	CCWGG	4 cut(s)	691, 753, 1120, 1240
AjuI	GAANNNNNNNTTGG	2 cut(s)	1137, 1169
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	6 cut(s)	100, 142, 417, 446, 596, 856
AluI	AGCT	6 cut(s)	100, 142, 417, 446, 596, 856
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	3 cut(s)	583, 953, 1232
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	3 cut(s)	655, 763, 1123
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	3 cut(s)	178, 832, 1301
AspS9I	GGNCC	2 cut(s)	656, 764
AsuHPI	GGTGA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	6 cut(s)	175, 185, 725, 763, 1031, 1164
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	4 cut(s)	693, 755, 1122, 1242
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	243, 1306
BfrI	CTTAAG	1 cut(s)	1274
BglII	AGATCT	1 cut(s)	1138
BisI	GCNGC	1 cut(s)	609
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	4 cut(s)	693, 755, 1122, 1242
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	656, 764
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	4 cut(s)	693, 755, 1122, 1242
BmsI	GCATC	1 cut(s)	1080
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	792
Bsa29I	ATCGAT	1 cut(s)	1236
BsaJI	CCNNGG	2 cut(s)	660, 1120
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	6 cut(s)	148, 178, 443, 473, 1149, 1179
Bsc4I	CCNNNNNNNGG	1 cut(s)	1132
Bse1I	ACTGG	3 cut(s)	117, 819, 1222
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	4 cut(s)	693, 755, 1122, 1242
BseCI	ATCGAT	1 cut(s)	1236
BseDI	CCNNGG	2 cut(s)	660, 1120
BseGI	GGATG	5 cut(s)	97, 402, 736, 1095, 1175
BseLI	CCNNNNNNNGG	1 cut(s)	1132
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	3 cut(s)	117, 819, 1222
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	3 cut(s)	657, 765, 1125
BshVI	ATCGAT	1 cut(s)	1236
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	1132
BsmAI	GTCTC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	657, 765, 1125
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
Bsp1720I	GCTNAGC	1 cut(s)	413
BspACI	CCGC	4 cut(s)	45, 390, 735, 1254
BspANI	GGCC	3 cut(s)	657, 765, 1125
BspCNI	CTCAG	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	1236
BspLI	GGNNCC	1 cut(s)	658
BspPI	GGATC	3 cut(s)	583, 953, 1232
BspTI	CTTAAG	1 cut(s)	1274
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	117, 819, 1222
BssECI	CCNNGG	2 cut(s)	660, 1120
BssMI	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	4 cut(s)	693, 755, 1122, 1242
Bst4CI	ACNGT	5 cut(s)	37, 71, 923, 1218, 1282
Bst6I	CTCTTC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	1274
BstC8I	GCNNGC	2 cut(s)	63, 1252
BstDEI	CTNAG	2 cut(s)	287, 413
BstF5I	GGATG	5 cut(s)	97, 402, 736, 1095, 1175
BstKTI	GATC	6 cut(s)	349, 578, 948, 1141, 1151, 1240
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 158, 1210
BstNI	CCWGG	4 cut(s)	693, 755, 1122, 1242
BstSCI	CCNGG	4 cut(s)	691, 753, 1120, 1240
BstV1I	GCAGC	1 cut(s)	595
BstX2I	RGATCY	2 cut(s)	945, 1138
BstXI	CCANNNNNNTGG	2 cut(s)	761, 1037
BstYI	RGATCY	2 cut(s)	945, 1138
Bsu15I	ATCGAT	1 cut(s)	1236
BsuRI	GGCC	3 cut(s)	657, 765, 1125
BsuTUI	ATCGAT	1 cut(s)	1236
BtsCI	GGATG	5 cut(s)	97, 402, 736, 1095, 1175
BtsIMutI	CAGTG	3 cut(s)	826, 1012, 1287
Cac8I	GCNNGC	2 cut(s)	63, 1252
CaiI	CAGNNNCTG	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	656, 764
ClaI	ATCGAT	1 cut(s)	1236
CseI	GACGC	2 cut(s)	1064, 1279
Csp6I	GTAC	2 cut(s)	1024, 1219
CspCI	CAANNNNNGTGG	2 cut(s)	627, 662
CviAII	CATG	3 cut(s)	175, 311, 1034
CviQI	GTAC	2 cut(s)	1024, 1219
DdeI	CTNAG	2 cut(s)	287, 413
DpnI	GATC	6 cut(s)	348, 577, 947, 1140, 1150, 1239
DpnII	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	1123
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	2 cut(s)	34, 750
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	1079
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	1301
EcoRII	CCWGG	4 cut(s)	691, 753, 1120, 1240
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	3 cut(s)	178, 314, 1037
FatI	CATG	3 cut(s)	174, 310, 1033
FauI	CCCGC	2 cut(s)	383, 1247
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	5 cut(s)	104, 389, 743, 1102, 1182
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	2 cut(s)	243, 1306
GluI	GCNGC	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	657, 765, 1125
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	1064, 1279
Hin1II	CATG	3 cut(s)	178, 314, 1037
HincII	GTYRAC	1 cut(s)	1079
HindII	GTYRAC	1 cut(s)	1079
HinfI	GANTC	3 cut(s)	793, 863, 1063
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	3 cut(s)	824, 906, 1079
Hpy188I	TCNGA	4 cut(s)	290, 357, 370, 964
Hpy8I	GTNNAC	3 cut(s)	824, 906, 1079
HpyAV	CCTTC	3 cut(s)	260, 501, 693
HpyCH4III	ACNGT	5 cut(s)	37, 71, 923, 1218, 1282
HpyCH4V	TGCA	3 cut(s)	161, 433, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 158, 1210
HpyF3I	CTNAG	2 cut(s)	287, 413
Hsp92II	CATG	3 cut(s)	178, 314, 1037
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
LmnI	GCTCC	3 cut(s)	157, 422, 593
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	1 cut(s)	1080
MaeI	CTAG	2 cut(s)	243, 1306
MaeIII	GTNAC	4 cut(s)	71, 398, 860, 1007
MalI	GATC	6 cut(s)	348, 577, 947, 1140, 1150, 1239
MboI	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
MboII	GAAGA	2 cut(s)	680, 1148
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	945, 1138
MhlI	GDGCHC	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	1125
MluCI	AATT	7 cut(s)	178, 186, 513, 832, 970, 1245, 1301
MluNI	TGGCCA	1 cut(s)	1125
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	1 cut(s)	1054
Mox20I	TGGCCA	1 cut(s)	1125
MscI	TGGCCA	1 cut(s)	1125
MseI	TTAA	4 cut(s)	182, 275, 1109, 1275
MslI	CAYNNNNRTG	3 cut(s)	203, 329, 407
Msp20I	TGGCCA	1 cut(s)	1125
MspCI	CTTAAG	1 cut(s)	1274
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	4 cut(s)	693, 755, 1122, 1242
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	4 cut(s)	693, 755, 1122, 1242
MwoI	GCNNNNNNNGC	3 cut(s)	106, 158, 1210
NdeII	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
NlaIII	CATG	3 cut(s)	178, 314, 1037
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	3 cut(s)	71, 860, 1007
OliI	CACNNNNGTG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	793, 1063
PfoI	TCCNGGA	1 cut(s)	1240
PkrI	GCNGC	1 cut(s)	610
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	4 cut(s)	691, 753, 1120, 1240
PspGI	CCWGG	4 cut(s)	691, 753, 1120, 1240
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	2 cut(s)	656, 764
PstNI	CAGNNNCTG	1 cut(s)	294
PsuI	RGATCY	2 cut(s)	945, 1138
RsaI	GTAC	2 cut(s)	1025, 1220
RsaNI	GTAC	2 cut(s)	1024, 1219
RseI	CAYNNNNRTG	3 cut(s)	203, 329, 407
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	182, 275, 1109, 1275
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	6 cut(s)	346, 575, 945, 1138, 1148, 1237
Sau96I	GGNCC	2 cut(s)	656, 764
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	4 cut(s)	693, 755, 1122, 1242
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	1080
SmiMI	CAYNNNNRTG	3 cut(s)	203, 329, 407
SmlI	CTYRAG	2 cut(s)	807, 1274
SmoI	CTYRAG	2 cut(s)	807, 1274
Sse9I	AATT	7 cut(s)	178, 186, 513, 832, 970, 1245, 1301
SsiI	CCGC	4 cut(s)	45, 390, 735, 1254
SspI	AATATT	1 cut(s)	1113
SspMI	CTAG	2 cut(s)	243, 1306
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	4 cut(s)	691, 753, 1120, 1240
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	5 cut(s)	37, 71, 923, 1218, 1282
TaqI	TCGA	6 cut(s)	11, 102, 634, 893, 1046, 1236
TasI	AATT	7 cut(s)	178, 186, 513, 832, 970, 1245, 1301
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	2 cut(s)	793, 1063
Tru1I	TTAA	4 cut(s)	182, 275, 1109, 1275
Tru9I	TTAA	4 cut(s)	182, 275, 1109, 1275
TscAI	CASTG	3 cut(s)	826, 1012, 1287
TseFI	GTSAC	3 cut(s)	71, 860, 1007
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	3 cut(s)	71, 860, 1007
TspDTI	ATGAA	2 cut(s)	191, 1187
TspGWI	ACGGA	2 cut(s)	608, 1148
TspRI	CASTG	3 cut(s)	826, 1012, 1287
Vha464I	CTTAAG	1 cut(s)	1274
XapI	RAATTY	3 cut(s)	178, 832, 1301
XspI	CTAG	2 cut(s)	243, 1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.