Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

69160367 .. 69169355

Gene Structure 8989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTACCCTTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGTGAGTTCCAGTTGCCGTGAAAAGTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAACTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACCGGCAATCACCGGGTCATTGTTAGTGACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACGGCAGACCTGGAAAGATCGCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTTCACACACTGAGAAAGCCACAGTACCAGGAAAATGTTCTTCGACTCAACAGTTTATTCTGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

352

Amino Acids

40.27

Weight (kDa)

9.15

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	43 - 152	2.4e-26	Peptidase family C78
Peptidase_C78	PF07910	234 - 340	7.9e-15	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 980
AclI	AACGTT	1 cut(s)	768
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	2 cut(s)	821, 1016
AfiI	CCNNNNNNNGG	1 cut(s)	855
AgsI	TTSAA	6 cut(s)	62, 376, 495, 705, 827, 863
AjnI	CCWGG	5 cut(s)	21, 487, 916, 936, 1017
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	213, 338
AluI	AGCT	2 cut(s)	213, 338
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	26, 335, 404, 427, 889
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	1026
AspS9I	GGNCC	3 cut(s)	452, 560, 913
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	2 cut(s)	668, 779
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	3 cut(s)	452, 560, 913
AxyI	CCTNAGG	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	13, 347, 391, 414, 901
BccI	CCATC	8 cut(s)	67, 294, 295, 375, 559, 755, 827, 960
BceAI	ACGGC	2 cut(s)	606, 945
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	5 cut(s)	23, 489, 918, 938, 1019
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	3 cut(s)	39, 108, 645
BisI	GCNGC	5 cut(s)	27, 336, 405, 428, 890
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	5 cut(s)	28, 337, 406, 429, 891
Bme1390I	CCNGG	6 cut(s)	23, 489, 791, 918, 938, 1019
Bme18I	GGWCC	3 cut(s)	452, 560, 913
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	452, 560, 913
BmiI	GGNNCC	1 cut(s)	915
BmrFI	CCNGG	6 cut(s)	23, 489, 791, 918, 938, 1019
BmsI	GCATC	2 cut(s)	322, 876
BoxI	GACNNNNGTC	1 cut(s)	918
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	791
BsaJI	CCNNGG	1 cut(s)	916
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	615
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	5 cut(s)	23, 489, 918, 938, 1019
BseDI	CCNNGG	1 cut(s)	916
BseGI	GGATG	3 cut(s)	198, 891, 971
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMII	CTCAG	3 cut(s)	74, 156, 992
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	1002
BseXI	GCAGC	5 cut(s)	13, 347, 391, 414, 901
BsgI	GTGCAG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	780, 790
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	156, 838
BsoBI	CYCGRG	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	142, 161, 346, 741, 944
Bsp1720I	GCTNAGC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	75, 157, 993
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	915
BspPI	GGATC	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	1 cut(s)	916
BssMI	GATC	5 cut(s)	142, 161, 346, 741, 944
Bst2UI	CCWGG	5 cut(s)	23, 489, 918, 938, 1019
Bst4CI	ACNGT	2 cut(s)	1014, 1043
Bst6I	CTCTTC	3 cut(s)	489, 501, 530
BstC8I	GCNNGC	2 cut(s)	340, 432
BstDEI	CTNAG	5 cut(s)	83, 165, 209, 456, 1001
BstF5I	GGATG	3 cut(s)	198, 891, 971
BstKTI	GATC	5 cut(s)	145, 164, 349, 744, 947
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	5 cut(s)	142, 161, 346, 741, 944
BstNI	CCWGG	5 cut(s)	23, 489, 918, 938, 1019
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	6 cut(s)	21, 487, 789, 916, 936, 1017
BstV1I	GCAGC	5 cut(s)	13, 347, 391, 414, 901
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	198, 891, 971
BtsIMutI	CAGTG	1 cut(s)	998
Cac8I	GCNNGC	2 cut(s)	340, 432
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	3 cut(s)	452, 560, 913
Csp6I	GTAC	2 cut(s)	820, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	53, 593, 733, 830
CviQI	GTAC	2 cut(s)	820, 1015
DdeI	CTNAG	5 cut(s)	83, 165, 209, 456, 1001
DpnI	GATC	5 cut(s)	144, 163, 348, 743, 946
DpnII	GATC	5 cut(s)	142, 161, 346, 741, 944
Eam1104I	CTCTTC	3 cut(s)	489, 501, 530
EarI	CTCTTC	3 cut(s)	489, 501, 530
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	452, 560, 913
Eco57I	CTGAAG	1 cut(s)	971
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	243
EcoRII	CCWGG	5 cut(s)	21, 487, 916, 936, 1017
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	4 cut(s)	56, 596, 736, 833
FatI	CATG	4 cut(s)	52, 592, 732, 829
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	27, 336, 405, 428, 890
FokI	GGATG	3 cut(s)	185, 898, 978
Fsp4HI	GCNGC	5 cut(s)	27, 336, 405, 428, 890
FspBI	CTAG	3 cut(s)	39, 108, 645
GluI	GCNGC	5 cut(s)	27, 336, 405, 428, 890
HapII	CCGG	2 cut(s)	780, 790
Hin1II	CATG	4 cut(s)	56, 596, 736, 833
HinfI	GANTC	6 cut(s)	170, 241, 589, 659, 859, 1035
HpaII	CCGG	2 cut(s)	780, 790
HphI	GGTGA	2 cut(s)	668, 779
Hpy166II	GTNNAC	2 cut(s)	560, 994
Hpy188I	TCNGA	3 cut(s)	153, 166, 346
Hpy188III	TCNNGA	7 cut(s)	245, 278, 514, 593, 690, 745, 843
Hpy8I	GTNNAC	2 cut(s)	560, 994
HpyAV	CCTTC	3 cut(s)	56, 489, 946
HpyCH4III	ACNGT	2 cut(s)	1014, 1043
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	4 cut(s)	229, 266, 335, 889
HpyF3I	CTNAG	5 cut(s)	83, 165, 209, 456, 1001
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	4 cut(s)	56, 596, 736, 833
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	142, 161, 346, 741, 944
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	5 cut(s)	13, 347, 391, 414, 901
LweI	GCATC	2 cut(s)	322, 876
MaeI	CTAG	3 cut(s)	39, 108, 645
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	4 cut(s)	194, 764, 769, 803
MalI	GATC	5 cut(s)	144, 163, 348, 743, 946
MboI	GATC	5 cut(s)	142, 161, 346, 741, 944
MboII	GAAGA	4 cut(s)	476, 518, 547, 1022
MflI	RGATCY	1 cut(s)	741
MluCI	AATT	7 cut(s)	57, 363, 546, 679, 685, 748, 906
MlyI	GAGTC	3 cut(s)	235, 598, 1029
MnlI	CCTC	5 cut(s)	160, 502, 531, 956, 980
MroXI	GAANNNNTTC	1 cut(s)	1026
MseI	TTAA	4 cut(s)	600, 756, 905, 1057
MslI	CAYNNNNRTG	3 cut(s)	203, 528, 654
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	780, 790
MspR9I	CCNGG	6 cut(s)	23, 489, 791, 918, 938, 1019
Mva1269I	GAATGC	2 cut(s)	156, 838
MvaI	CCWGG	5 cut(s)	23, 489, 918, 938, 1019
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	5 cut(s)	142, 161, 346, 741, 944
NlaIII	CATG	4 cut(s)	56, 596, 736, 833
NlaIV	GGNNCC	1 cut(s)	915
NmuCI	GTSAC	1 cut(s)	803
PaeR7I	CTCGAG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	592
PctI	GAATGC	2 cut(s)	156, 838
PdmI	GAANNNNTTC	1 cut(s)	1026
PfeI	GAWTC	3 cut(s)	170, 659, 859
PkrI	GCNGC	5 cut(s)	28, 337, 406, 429, 891
PleI	GAGTC	3 cut(s)	235, 597, 1029
PpsI	GAGTC	3 cut(s)	235, 597, 1029
PshAI	GACNNNNGTC	1 cut(s)	918
PsiI	TTATAA	2 cut(s)	684, 980
Psp1406I	AACGTT	1 cut(s)	768
Psp6I	CCWGG	5 cut(s)	21, 487, 916, 936, 1017
PspGI	CCWGG	5 cut(s)	21, 487, 916, 936, 1017
PspN4I	GGNNCC	1 cut(s)	915
PspPI	GGNCC	3 cut(s)	452, 560, 913
PsuI	RGATCY	1 cut(s)	741
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	821, 1016
RsaNI	GTAC	2 cut(s)	820, 1015
RseI	CAYNNNNRTG	3 cut(s)	203, 528, 654
SaqAI	TTAA	4 cut(s)	600, 756, 905, 1057
SatI	GCNGC	5 cut(s)	27, 336, 405, 428, 890
Sau3AI	GATC	5 cut(s)	142, 161, 346, 741, 944
Sau96I	GGNCC	3 cut(s)	452, 560, 913
SchI	GAGTC	3 cut(s)	235, 598, 1029
ScrFI	CCNGG	6 cut(s)	23, 489, 791, 918, 938, 1019
SfaNI	GCATC	2 cut(s)	322, 876
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	3 cut(s)	452, 560, 913
SlaI	CTCGAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	3 cut(s)	203, 528, 654
SmlI	CTYRAG	2 cut(s)	243, 305
SmoI	CTYRAG	2 cut(s)	243, 305
Sse9I	AATT	7 cut(s)	57, 363, 546, 679, 685, 748, 906
SspMI	CTAG	3 cut(s)	39, 108, 645
StyD4I	CCNGG	6 cut(s)	21, 487, 789, 916, 936, 1017
TaaI	ACNGT	2 cut(s)	1014, 1043
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	6 cut(s)	160, 244, 465, 632, 842, 1033
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	7 cut(s)	57, 363, 546, 679, 685, 748, 906
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	3 cut(s)	170, 659, 859
Tru1I	TTAA	4 cut(s)	600, 756, 905, 1057
Tru9I	TTAA	4 cut(s)	600, 756, 905, 1057
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	5 cut(s)	26, 335, 404, 427, 889
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	1005
VpaK11BI	GGWCC	3 cut(s)	452, 560, 913
XapI	RAATTY	1 cut(s)	363
XhoI	CTCGAG	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	1026
XspI	CTAG	3 cut(s)	39, 108, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.