Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

23239751 .. 23243238

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGATGATTATTCTTCGTGTTGCCCATTCTGTAGTCTCACAATTCCATCATCACAACTCGAACGGCATGCGAATAGTCACTTTGAGGCTGAAGATGAACAACTGGCTATGGACTTGGAGTTTGCCCACCAGCTTGCTTTAGCTCCTTCTTCACCGCCATCCATGTTACTTAATAATCAAACAATTAGAGACTTGCCATTTGTGAGATCTGATGGGCAATGTGGCATGGAGGAGGGTATCTCCAGTCTGGTTGCTTTACAGACTAGAACTACTTTCTATGAGATTGAAGGTGGTGTGACGGCTTTGCTGAGAGGGTGTTTGGAGTTGGAACCTAGAAATACGACTACTATTTTGTGTGGTTATACTGATCATATTCAGAGCATTCGATCCGAAGATTCTGGCTGGGGTTGTGGGTGGCGTAATATCCAAATGCTGAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGATGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATAGCTTGGGGAAAGGGATTTGATGTAGCTGGGTCTGATCACTTTAATAACAAAATTTATGGCTTGAGAAGATGGATTGGAACAACTGAATGTGCTGCCCTTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCCAAAGAACTTGAACCATATTATCTTTCTCTTCCTGGTTCAAGTCTTGGGGATGAGGTCAAGAGAATACATAATGGTGGAAAGAGGAAAGCAATTCAGGTTCGTGGACCAATGGATAGATATCTTCCCGGAAGGAGTCATGATATTAACCAAGCGAGTTCGAGTTGCTGTGAAAAATCAAGTTGTTCTACTAGCCAGAAAGGAGGTGACTCTTGGGGTAGGAAATGTGATTATAATTCGGAAAATAAGTTTTCAAGGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGCAACGTTAGCAGAAACGGAAATCACCGAGTGATAATTAGTAACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAACAACATACTCTCTTAATTTTGGACCCTGGTCACAGGACAGCAGAGCTGGAAAGATCACTGAGGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGGGTTCACACACTGAGAAAGCCACAGTACCAGTTGTGTTATATTGATTCTGGCATTGCAAGTGGAGATGAACTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

444

Amino Acids

50.04

Weight (kDa)

7.23

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	119 - 227	1.2e-25	Peptidase family C78
Peptidase_C78	PF07910	310 - 418	1.6e-16	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1208
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	996
AclWI	GGATC	2 cut(s)	381, 977
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	1021
AfaI	GTAC	2 cut(s)	1049, 1244
AfiI	CCNNNNNNNGG	1 cut(s)	1083
AgsI	TTSAA	7 cut(s)	287, 692, 720, 933, 1055, 1091, 1325
AjnI	CCWGG	2 cut(s)	712, 1144
AluBI	AGCT	6 cut(s)	133, 143, 438, 539, 563, 1165
AluI	AGCT	6 cut(s)	133, 143, 438, 539, 563, 1165
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	3 cut(s)	41, 183, 458
AlwI	GGATC	2 cut(s)	381, 977
Ama87I	CYCGRG	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	629, 652
ApoI	RAATTY	1 cut(s)	588
ArsI	GACNNNNNNTTYG	6 cut(s)	104, 136, 182, 214, 334, 366
AspS9I	GGNCC	3 cut(s)	677, 785, 1141
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	3 cut(s)	144, 896, 1007
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	3 cut(s)	677, 785, 1141
BanII	GRGCYC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	616, 639
BccI	CCATC	9 cut(s)	55, 166, 206, 519, 520, 600, 983, 1055, 1188
BceAI	ACGGC	2 cut(s)	80, 315
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 449, 483
BciT130I	CCWGG	2 cut(s)	714, 1146
BclI	TGATCA	2 cut(s)	367, 571
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	3 cut(s)	41, 183, 458
BfaI	CTAG	4 cut(s)	264, 333, 870, 1330
BfmI	CTRYAG	2 cut(s)	31, 1305
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	2 cut(s)	630, 653
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	2 cut(s)	631, 654
Bme1390I	CCNGG	3 cut(s)	714, 807, 1146
Bme18I	GGWCC	3 cut(s)	677, 785, 1141
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	3 cut(s)	677, 785, 1141
BmiI	GGNNCC	3 cut(s)	330, 679, 1143
BmrFI	CCNGG	3 cut(s)	714, 807, 1146
BmsI	GCATC	1 cut(s)	1104
BoxI	GACNNNNGTC	1 cut(s)	1146
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	2 cut(s)	226, 1310
Bpu1102I	GCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	3 cut(s)	551, 619, 1283
BpuMI	CCSGG	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	1 cut(s)	1083
Bse1I	ACTGG	4 cut(s)	108, 243, 1246, 1293
Bse3DI	GCAATG	2 cut(s)	224, 1269
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	714, 1146
BseDI	CCNNGG	1 cut(s)	1144
BseGI	GGATG	5 cut(s)	10, 158, 736, 1119, 1199
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	1083
BseMI	GCAATG	2 cut(s)	224, 1269
BseMII	CTCAG	4 cut(s)	299, 425, 1169, 1220
BseNI	ACTGG	4 cut(s)	108, 243, 1246, 1293
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	616, 639
BseYI	CCCAGC	2 cut(s)	402, 563
BsgI	GTGCAG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	1083
BsmAI	GTCTC	3 cut(s)	41, 183, 458
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	2 cut(s)	381, 1066
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	4 cut(s)	300, 426, 1170, 1221
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	3 cut(s)	330, 679, 1143
BspPI	GGATC	2 cut(s)	381, 977
BsrDI	GCAATG	2 cut(s)	224, 1269
BsrI	ACTGG	4 cut(s)	108, 243, 1246, 1293
BssECI	CCNNGG	1 cut(s)	1144
BssMI	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
Bst2UI	CCWGG	2 cut(s)	714, 1146
Bst4CI	ACNGT	2 cut(s)	1242, 1306
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	69, 135, 657
BstDEI	CTNAG	4 cut(s)	308, 434, 1178, 1229
BstF5I	GGATG	5 cut(s)	10, 158, 736, 1119, 1199
BstKTI	GATC	6 cut(s)	209, 370, 389, 574, 972, 1175
BstMAI	GTCTC	3 cut(s)	41, 183, 458
BstMBI	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
BstMWI	GCNNNNNNNGC	1 cut(s)	999
BstNI	CCWGG	2 cut(s)	714, 1146
BstNSI	RCATGY	1 cut(s)	71
BstPAI	GACNNNNGTC	1 cut(s)	1146
BstSCI	CCNGG	3 cut(s)	712, 805, 1144
BstSFI	CTRYAG	2 cut(s)	31, 1305
BstV1I	GCAGC	2 cut(s)	616, 639
BstX2I	RGATCY	2 cut(s)	206, 969
BstYI	RGATCY	2 cut(s)	206, 969
BtsCI	GGATG	5 cut(s)	10, 158, 736, 1119, 1199
BtsIMutI	CAGTG	2 cut(s)	1175, 1226
Cac8I	GCNNGC	3 cut(s)	69, 135, 657
CciI	TCATGA	1 cut(s)	817
Cfr13I	GGNCC	3 cut(s)	677, 785, 1141
Csp6I	GTAC	2 cut(s)	1048, 1243
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	6 cut(s)	68, 163, 226, 818, 961, 1058
CviQI	GTAC	2 cut(s)	1048, 1243
DdeI	CTNAG	4 cut(s)	308, 434, 1178, 1229
DpnI	GATC	6 cut(s)	208, 369, 388, 573, 971, 1174
DpnII	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
DraIII	CACNNNGTG	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	440
Eco32I	GATATC	2 cut(s)	508, 800
Eco47I	GGWCC	3 cut(s)	677, 785, 1141
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	712, 1144
EcoRV	GATATC	2 cut(s)	508, 800
EcoT38I	GRGCYC	1 cut(s)	440
FaeI	CATG	6 cut(s)	71, 166, 229, 821, 964, 1061
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	6 cut(s)	67, 162, 225, 817, 960, 1057
FbaI	TGATCA	2 cut(s)	367, 571
Fnu4HI	GCNGC	2 cut(s)	630, 653
FokI	GGATG	5 cut(s)	17, 145, 743, 1126, 1206
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	630, 653
FspBI	CTAG	4 cut(s)	264, 333, 870, 1330
GluI	GCNGC	2 cut(s)	630, 653
GsaI	CCCAGC	2 cut(s)	406, 567
GsuI	CTGGAG	2 cut(s)	226, 1310
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	6 cut(s)	71, 166, 229, 821, 964, 1061
HinfI	GANTC	6 cut(s)	395, 466, 814, 887, 1087, 1262
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	3 cut(s)	144, 896, 1007
Hpy166II	GTNNAC	2 cut(s)	785, 1222
Hpy188I	TCNGA	5 cut(s)	211, 378, 391, 571, 919
Hpy188III	TCNNGA	8 cut(s)	470, 503, 739, 818, 973, 1071, 1300, 1322
Hpy8I	GTNNAC	2 cut(s)	785, 1222
HpyAV	CCTTC	3 cut(s)	156, 281, 804
HpyCH4III	ACNGT	2 cut(s)	1242, 1306
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	4 cut(s)	454, 491, 1117, 1274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	999
HpyF3I	CTNAG	4 cut(s)	308, 434, 1178, 1229
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	6 cut(s)	71, 166, 229, 821, 964, 1061
Ksp22I	TGATCA	2 cut(s)	367, 571
Kzo9I	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
LmnI	GCTCC	2 cut(s)	148, 443
Lsp1109I	GCAGC	2 cut(s)	616, 639
LweI	GCATC	1 cut(s)	1104
MaeI	CTAG	4 cut(s)	264, 333, 870, 1330
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	6 cut(s)	77, 165, 295, 884, 1031, 1148
MalI	GATC	6 cut(s)	208, 369, 388, 573, 971, 1174
MboI	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
MboII	GAAGA	7 cut(s)	6, 104, 141, 404, 615, 701, 794
MflI	RGATCY	2 cut(s)	206, 969
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	8 cut(s)	42, 183, 588, 771, 913, 976, 1026, 1134
MlyI	GAGTC	3 cut(s)	460, 823, 881
MmeI	TCCRAC	1 cut(s)	306
MseI	TTAA	5 cut(s)	171, 579, 825, 984, 1133
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	3 cut(s)	714, 807, 1146
Mva1269I	GAATGC	2 cut(s)	381, 1066
MvaI	CCWGG	2 cut(s)	714, 1146
MwoI	GCNNNNNNNGC	1 cut(s)	999
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
NlaIII	CATG	6 cut(s)	71, 166, 229, 821, 964, 1061
NlaIV	GGNNCC	3 cut(s)	330, 679, 1143
NmuCI	GTSAC	4 cut(s)	77, 295, 884, 1148
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	468
PagI	TCATGA	1 cut(s)	817
PctI	GAATGC	2 cut(s)	381, 1066
PfeI	GAWTC	3 cut(s)	395, 1087, 1262
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	2 cut(s)	631, 654
PleI	GAGTC	3 cut(s)	460, 822, 881
PpsI	GAGTC	3 cut(s)	460, 822, 881
PshAI	GACNNNNGTC	1 cut(s)	1146
PsiI	TTATAA	2 cut(s)	912, 1208
Psp124BI	GAGCTC	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	712, 1144
PspFI	CCCAGC	2 cut(s)	402, 563
PspGI	CCWGG	2 cut(s)	712, 1144
PspN4I	GGNNCC	3 cut(s)	330, 679, 1143
PspPI	GGNCC	3 cut(s)	677, 785, 1141
PsuI	RGATCY	2 cut(s)	206, 969
RsaI	GTAC	2 cut(s)	1049, 1244
RsaNI	GTAC	2 cut(s)	1048, 1243
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	5 cut(s)	171, 579, 825, 984, 1133
SatI	GCNGC	2 cut(s)	630, 653
Sau3AI	GATC	6 cut(s)	206, 367, 386, 571, 969, 1172
Sau96I	GGNCC	3 cut(s)	677, 785, 1141
SchI	GAGTC	3 cut(s)	460, 823, 881
ScrFI	CCNGG	3 cut(s)	714, 807, 1146
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	1104
SfcI	CTRYAG	2 cut(s)	31, 1305
Sfr274I	CTCGAG	1 cut(s)	468
SinI	GGWCC	3 cut(s)	677, 785, 1141
SlaI	CTCGAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	4 cut(s)	468, 530, 598, 1298
SmoI	CTYRAG	4 cut(s)	468, 530, 598, 1298
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	8 cut(s)	42, 183, 588, 771, 913, 976, 1026, 1134
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	4 cut(s)	264, 333, 870, 1330
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	712, 805, 1144
TaaI	ACNGT	2 cut(s)	1242, 1306
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	5 cut(s)	60, 385, 469, 839, 1070
TasI	AATT	8 cut(s)	42, 183, 588, 771, 913, 976, 1026, 1134
TatI	WGTACW	1 cut(s)	1047
TfiI	GAWTC	3 cut(s)	395, 1087, 1262
Tru1I	TTAA	5 cut(s)	171, 579, 825, 984, 1133
Tru9I	TTAA	5 cut(s)	171, 579, 825, 984, 1133
TscAI	CASTG	2 cut(s)	1182, 1233
TseFI	GTSAC	4 cut(s)	77, 295, 884, 1148
TseI	GCWGC	2 cut(s)	629, 652
Tsp45I	GTSAC	4 cut(s)	77, 295, 884, 1148
TspDTI	ATGAA	2 cut(s)	111, 1299
TspGWI	ACGGA	2 cut(s)	629, 1023
TspRI	CASTG	2 cut(s)	1182, 1233
VpaK11BI	GGWCC	3 cut(s)	677, 785, 1141
XapI	RAATTY	1 cut(s)	588
XceI	RCATGY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	468
XspI	CTAG	4 cut(s)	264, 333, 870, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.