Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

23749412 .. 23752039

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTTATCTCACATTTGCTTATGCAAAGGCAAGAGACTCGAGATGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGGTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAGAAGATGGATTGGAACAACTGAATGTGCTGCCCTTTTCCGTTCTTTTGGGCTGCAAGCAAGGATAGTGGATTTTGGTCCCAAGGAACTCGAACCATATTATCTTTCTCTTCCTGGTTCAAGTCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGAAAGAGGAAAGCAATTCAGGTTTGTGGACCAATGGATAGATATTTGCCGGAAAGGAGTCATGATATTAACCAAGCGAGTCCCAGTTGCCATGAAAAGTCGAGTTGTTCTACTAGCCAGAAAGGTGACTCTTGGTGTAGGAAAAGTCATTATAATTCCGGAAATAAGTTTTTCAGGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAGAACCGGCAACCAACGGGTGATTGTTAGTGACAAAACACCCTTGTACTTCCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACAAAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACAGCAGAGCTGGAAAGATCACTCAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGGGTTCACACACTGAGAAAGCCACAATACCAGCTGTGTTATATTGATCCTGGCATTGCAAGTGGAGAGGAAGTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

300

Amino Acids

34.18

Weight (kDa)

9.23

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	1 - 84	7.1e-14	Peptidase family C78
Peptidase_C78	PF07910	170 - 274	4.4e-16	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	480, 776
AccIII	TCCGGA	1 cut(s)	485
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	545, 824
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	3 cut(s)	291, 659, 893
AjnI	CCWGG	3 cut(s)	283, 712, 832
AluBI	AGCT	3 cut(s)	134, 733, 817
AluI	AGCT	3 cut(s)	134, 733, 817
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	545, 824
Ama87I	CYCGRG	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	485
ApeKI	GCWGC	4 cut(s)	131, 200, 223, 685
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	248, 356, 709
AsuHPI	GGTGA	2 cut(s)	464, 601
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	3 cut(s)	248, 356, 709
BbvI	GCAGC	4 cut(s)	143, 187, 210, 697
BccI	CCATC	6 cut(s)	90, 91, 171, 551, 623, 756
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	3 cut(s)	285, 714, 834
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	4 cut(s)	132, 201, 224, 686
BlsI	GCNGC	4 cut(s)	133, 202, 225, 687
Bme1390I	CCNGG	3 cut(s)	285, 714, 834
Bme18I	GGWCC	3 cut(s)	248, 356, 709
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	248, 356, 709
BmiI	GGNNCC	2 cut(s)	250, 711
BmrFI	CCNGG	3 cut(s)	285, 714, 834
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	118, 672
BmuI	ACTGGG	1 cut(s)	405
BoxI	GACNNNNGTC	1 cut(s)	714
BpuEI	CTTGAG	4 cut(s)	122, 190, 731, 851
BsaJI	CCNNGG	2 cut(s)	252, 712
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	3 cut(s)	285, 714, 834
BseDI	CCNNGG	2 cut(s)	252, 712
BseGI	GGATG	2 cut(s)	687, 767
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	4 cut(s)	143, 187, 210, 697
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	377, 486, 576
BslFI	GGGAC	2 cut(s)	234, 393
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	234, 393
BsmI	GAATGC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	142, 537, 740, 829
BspCNI	CTCAG	1 cut(s)	789
BspEI	TCCGGA	1 cut(s)	485
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	250, 711
BspPI	GGATC	2 cut(s)	545, 824
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	252, 712
BssMI	GATC	4 cut(s)	142, 537, 740, 829
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	285, 714, 834
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	285, 297
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	687, 767
BstKTI	GATC	4 cut(s)	145, 540, 743, 832
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	142, 537, 740, 829
BstNI	CCWGG	3 cut(s)	285, 714, 834
BstPAI	GACNNNNGTC	1 cut(s)	714
BstSCI	CCNGG	3 cut(s)	283, 712, 832
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	4 cut(s)	143, 187, 210, 697
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	687, 767
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	248, 356, 709
Csp6I	GTAC	1 cut(s)	616
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	4 cut(s)	389, 419, 529, 626
CviJI	RGCY	8 cut(s)	100, 134, 168, 223, 444, 733, 805, 817
CviKI_1	RGCY	8 cut(s)	100, 134, 168, 223, 444, 733, 805, 817
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	4 cut(s)	144, 539, 742, 831
DpnII	GATC	4 cut(s)	142, 537, 740, 829
Eam1104I	CTCTTC	2 cut(s)	285, 297
EarI	CTCTTC	2 cut(s)	285, 297
Eco130I	CCWWGG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	3 cut(s)	248, 356, 709
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	3 cut(s)	283, 712, 832
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	392, 422, 532, 629
FaqI	GGGAC	2 cut(s)	234, 393
FatI	CATG	4 cut(s)	388, 418, 528, 625
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	132, 201, 224, 686
FokI	GGATG	2 cut(s)	694, 774
Fsp4HI	GCNGC	4 cut(s)	132, 201, 224, 686
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	4 cut(s)	132, 201, 224, 686
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	3 cut(s)	377, 486, 576
Hin1II	CATG	4 cut(s)	392, 422, 532, 629
HinfI	GANTC	5 cut(s)	37, 385, 406, 455, 655
HpaII	CCGG	3 cut(s)	377, 486, 576
HphI	GGTGA	2 cut(s)	464, 601
Hpy166II	GTNNAC	2 cut(s)	356, 790
Hpy188I	TCNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	356, 790
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	25, 62, 131, 226, 685, 842
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	4 cut(s)	392, 422, 532, 629
Kpn2I	TCCGGA	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	142, 537, 740, 829
Lsp1109I	GCAGC	4 cut(s)	143, 187, 210, 697
LweI	GCATC	2 cut(s)	118, 672
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	4 cut(s)	452, 560, 565, 599
MalI	GATC	4 cut(s)	144, 539, 742, 831
MboI	GATC	4 cut(s)	142, 537, 740, 829
MboII	GAAGA	3 cut(s)	186, 272, 314
MflI	RGATCY	1 cut(s)	537
MluCI	AATT	5 cut(s)	159, 342, 481, 544, 702
MlyI	GAGTC	4 cut(s)	31, 394, 415, 449
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	5 cut(s)	298, 327, 752, 776, 844
MroI	TCCGGA	1 cut(s)	485
MseI	TTAA	3 cut(s)	396, 552, 701
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	134, 817
MspI	CCGG	3 cut(s)	377, 486, 576
MspR9I	CCNGG	3 cut(s)	285, 714, 834
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	285, 714, 834
NdeII	GATC	4 cut(s)	142, 537, 740, 829
NlaIII	CATG	4 cut(s)	392, 422, 532, 629
NlaIV	GGNNCC	2 cut(s)	250, 711
NmuCI	GTSAC	2 cut(s)	452, 599
PaeR7I	CTCGAG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	388
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	655
PkrI	GCNGC	4 cut(s)	133, 202, 225, 687
PleI	GAGTC	4 cut(s)	31, 393, 414, 449
PpsI	GAGTC	4 cut(s)	31, 393, 414, 449
PshAI	GACNNNNGTC	1 cut(s)	714
PsiI	TTATAA	2 cut(s)	480, 776
Psp1406I	AACGTT	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	283, 712, 832
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	3 cut(s)	283, 712, 832
PspN4I	GGNNCC	2 cut(s)	250, 711
PspPI	GGNCC	3 cut(s)	248, 356, 709
PsuI	RGATCY	1 cut(s)	537
PvuII	CAGCTG	2 cut(s)	134, 817
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	396, 552, 701
SatI	GCNGC	4 cut(s)	132, 201, 224, 686
Sau3AI	GATC	4 cut(s)	142, 537, 740, 829
Sau96I	GGNCC	3 cut(s)	248, 356, 709
SchI	GAGTC	4 cut(s)	31, 394, 415, 449
ScrFI	CCNGG	3 cut(s)	285, 714, 834
SetI	ASST	8 cut(s)	136, 309, 351, 454, 525, 567, 735, 819
SfaNI	GCATC	2 cut(s)	118, 672
SfcI	CTRYAG	1 cut(s)	873
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	3 cut(s)	248, 356, 709
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	5 cut(s)	39, 101, 169, 746, 866
SmoI	CTYRAG	5 cut(s)	39, 101, 169, 746, 866
Sse9I	AATT	5 cut(s)	159, 342, 481, 544, 702
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	283, 712, 832
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	4 cut(s)	40, 261, 428, 638
TasI	AATT	5 cut(s)	159, 342, 481, 544, 702
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	3 cut(s)	396, 552, 701
Tru9I	TTAA	3 cut(s)	396, 552, 701
TscAI	CASTG	1 cut(s)	801
TseFI	GTSAC	2 cut(s)	452, 599
TseI	GCWGC	4 cut(s)	131, 200, 223, 685
Tsp45I	GTSAC	2 cut(s)	452, 599
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	801
VpaK11BI	GGWCC	3 cut(s)	248, 356, 709
XapI	RAATTY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.