Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Reverse (-)

611115 .. 613772

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAATTTGAATTGCAGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATAGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAATCTAGAGATACAACGACTTTTTTGTGTGGTTATATCGATCATATTCAGAGCATTCGGTCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGGCTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCCTTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGAAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGCGAGTTCCAGTTGCCATGAAAAGTCAAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAAGTAATTATAATTCAGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTCACCAAAACCGGCAATCACCGGGTCATTGTTAGTGACAAAACACCATTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTGAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACGGCAGACCTGGAAAGATCGCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTGCACACACTGAGAAAGCCACAGTACCAGTTGTGTTATATTGATCCTGGCATTTCAAGTGGAGATGAGGTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

425

Amino Acids

48.15

Weight (kDa)

7.01

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	98 - 209	3.5e-26	Peptidase family C78
Peptidase_C78	PF07910	291 - 399	4e-16	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	855, 1151
AclWI	GGATC	2 cut(s)	920, 1199
AcsI	RAATTY	2 cut(s)	4, 534
AcuI	CTGAAG	1 cut(s)	1142
AfaI	GTAC	2 cut(s)	992, 1187
AfiI	CCNNNNNNNGG	1 cut(s)	1026
AgsI	TTSAA	9 cut(s)	10, 44, 547, 666, 876, 998, 1034, 1218, 1268
AjnI	CCWGG	5 cut(s)	192, 658, 1087, 1107, 1207
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	2 cut(s)	384, 509
AluI	AGCT	2 cut(s)	384, 509
Alw21I	GWGCWC	1 cut(s)	1167
Alw26I	GTCTC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	1163
AlwI	GGATC	2 cut(s)	920, 1199
Ama87I	CYCGRG	1 cut(s)	414
ApaLI	GTGCAC	1 cut(s)	1163
ApeKI	GCWGC	5 cut(s)	197, 506, 575, 598, 1060
ApoI	RAATTY	2 cut(s)	4, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	3 cut(s)	623, 731, 1084
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	3 cut(s)	839, 934, 950
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	3 cut(s)	623, 731, 1084
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	1167
Bbv12I	GWGCWC	1 cut(s)	1167
BbvI	GCAGC	5 cut(s)	184, 518, 562, 585, 1072
BccI	CCATC	9 cut(s)	118, 238, 465, 466, 546, 730, 926, 998, 1131
BceAI	ACGGC	1 cut(s)	1116
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	5 cut(s)	194, 660, 1089, 1109, 1209
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	4 cut(s)	210, 279, 816, 1273
BfmI	CTRYAG	1 cut(s)	1248
BisI	GCNGC	5 cut(s)	198, 507, 576, 599, 1061
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	5 cut(s)	199, 508, 577, 600, 1062
Bme1390I	CCNGG	6 cut(s)	194, 660, 962, 1089, 1109, 1209
Bme18I	GGWCC	3 cut(s)	623, 731, 1084
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	623, 731, 1084
BmiI	GGNNCC	2 cut(s)	96, 1086
BmrFI	CCNGG	6 cut(s)	194, 660, 962, 1089, 1109, 1209
BmsI	GCATC	2 cut(s)	493, 1047
BoxI	GACNNNNGTC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	497, 1226
BpuMI	CCSGG	1 cut(s)	962
Bsa29I	ATCGAT	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	1087
BsaXI	ACNNNNNCTCC	2 cut(s)	1215, 1245
Bsc4I	CCNNNNNNNGG	1 cut(s)	1026
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	3 cut(s)	60, 786, 1189
Bse21I	CCTNAGG	1 cut(s)	627
BseBI	CCWGG	5 cut(s)	194, 660, 1089, 1109, 1209
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	1087
BseGI	GGATG	4 cut(s)	110, 369, 1062, 1142
BseLI	CCNNNNNNNGG	1 cut(s)	1026
BseMII	CTCAG	3 cut(s)	245, 327, 1163
BseNI	ACTGG	3 cut(s)	60, 786, 1189
BseRI	GAGGAG	1 cut(s)	1173
BseSI	GKGCMC	1 cut(s)	1167
BseXI	GCAGC	5 cut(s)	184, 518, 562, 585, 1072
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	1167
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	951, 961
BslI	CCNNNNNNNGG	1 cut(s)	1026
BsmAI	GTCTC	1 cut(s)	129
BsmI	GAATGC	2 cut(s)	327, 1009
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	1167
Bsp143I	GATC	5 cut(s)	313, 517, 912, 1115, 1204
Bsp1720I	GCTNAGC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	246, 328, 1164
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	96, 1086
BspPI	GGATC	2 cut(s)	920, 1199
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	3 cut(s)	60, 786, 1189
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	1087
BssMI	GATC	5 cut(s)	313, 517, 912, 1115, 1204
Bst2UI	CCWGG	5 cut(s)	194, 660, 1089, 1109, 1209
Bst4CI	ACNGT	2 cut(s)	1185, 1249
Bst6I	CTCTTC	2 cut(s)	660, 672
BstC8I	GCNNGC	4 cut(s)	17, 21, 511, 603
BstDEI	CTNAG	5 cut(s)	254, 336, 380, 627, 1172
BstF5I	GGATG	4 cut(s)	110, 369, 1062, 1142
BstKTI	GATC	5 cut(s)	316, 520, 915, 1118, 1207
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	5 cut(s)	313, 517, 912, 1115, 1204
BstNI	CCWGG	5 cut(s)	194, 660, 1089, 1109, 1209
BstNSI	RCATGY	1 cut(s)	23
BstPAI	GACNNNNGTC	1 cut(s)	1089
BstSCI	CCNGG	6 cut(s)	192, 658, 960, 1087, 1107, 1207
BstSFI	CTRYAG	1 cut(s)	1248
BstSLI	GKGCMC	1 cut(s)	1167
BstV1I	GCAGC	5 cut(s)	184, 518, 562, 585, 1072
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
Bsu15I	ATCGAT	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	627
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	110, 369, 1062, 1142
BtsIMutI	CAGTG	1 cut(s)	1169
Cac8I	GCNNGC	4 cut(s)	17, 21, 511, 603
CciI	TCATGA	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	623, 731, 1084
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	991, 1186
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	9 cut(s)	20, 115, 158, 172, 224, 764, 794, 904, 1001
CviQI	GTAC	2 cut(s)	991, 1186
DdeI	CTNAG	5 cut(s)	254, 336, 380, 627, 1172
DpnI	GATC	5 cut(s)	315, 519, 914, 1117, 1206
DpnII	GATC	5 cut(s)	313, 517, 912, 1115, 1204
Eam1104I	CTCTTC	2 cut(s)	660, 672
EarI	CTCTTC	2 cut(s)	660, 672
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	3 cut(s)	623, 731, 1084
Eco57I	CTGAAG	1 cut(s)	1142
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	414
EcoRII	CCWGG	5 cut(s)	192, 658, 1087, 1107, 1207
EcoRV	GATATC	1 cut(s)	454
FaeI	CATG	9 cut(s)	23, 118, 161, 175, 227, 767, 797, 907, 1004
FatI	CATG	9 cut(s)	19, 114, 157, 171, 223, 763, 793, 903, 1000
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	5 cut(s)	198, 507, 576, 599, 1061
FokI	GGATG	4 cut(s)	97, 356, 1069, 1149
Fsp4HI	GCNGC	5 cut(s)	198, 507, 576, 599, 1061
FspBI	CTAG	4 cut(s)	210, 279, 816, 1273
GluI	GCNGC	5 cut(s)	198, 507, 576, 599, 1061
GsaI	CCCAGC	1 cut(s)	82
HapII	CCGG	2 cut(s)	951, 961
Hin1II	CATG	9 cut(s)	23, 118, 161, 175, 227, 767, 797, 907, 1004
HinfI	GANTC	5 cut(s)	275, 341, 760, 830, 1030
HpaII	CCGG	2 cut(s)	951, 961
HphI	GGTGA	3 cut(s)	839, 934, 950
Hpy166II	GTNNAC	2 cut(s)	731, 1165
Hpy188I	TCNGA	4 cut(s)	134, 324, 337, 517
Hpy8I	GTNNAC	2 cut(s)	731, 1165
HpyAV	CCTTC	4 cut(s)	108, 227, 660, 1117
HpyCH4III	ACNGT	2 cut(s)	1185, 1249
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	6 cut(s)	15, 400, 437, 506, 1060, 1165
HpyF3I	CTNAG	5 cut(s)	254, 336, 380, 627, 1172
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	9 cut(s)	23, 118, 161, 175, 227, 767, 797, 907, 1004
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	313, 517, 912, 1115, 1204
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	5 cut(s)	184, 518, 562, 585, 1072
LweI	GCATC	2 cut(s)	493, 1047
MaeI	CTAG	4 cut(s)	210, 279, 816, 1273
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	5 cut(s)	29, 365, 935, 940, 974
MalI	GATC	5 cut(s)	315, 519, 914, 1117, 1206
MboI	GATC	5 cut(s)	313, 517, 912, 1115, 1204
MboII	GAAGA	4 cut(s)	56, 93, 647, 689
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	1167
MluCI	AATT	8 cut(s)	4, 10, 534, 717, 850, 856, 919, 1077
MlyI	GAGTC	1 cut(s)	769
MnlI	CCTC	9 cut(s)	31, 169, 331, 403, 673, 702, 1127, 1151, 1222
MseI	TTAA	3 cut(s)	771, 927, 1076
MslI	CAYNNNNRTG	3 cut(s)	374, 699, 825
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	951, 961
MspR9I	CCNGG	6 cut(s)	194, 660, 962, 1089, 1109, 1209
Mva1269I	GAATGC	2 cut(s)	327, 1009
MvaI	CCWGG	5 cut(s)	194, 660, 1089, 1109, 1209
NciI	CCSGG	1 cut(s)	962
NdeII	GATC	5 cut(s)	313, 517, 912, 1115, 1204
NlaIII	CATG	9 cut(s)	23, 118, 161, 175, 227, 767, 797, 907, 1004
NlaIV	GGNNCC	2 cut(s)	96, 1086
NmuCI	GTSAC	3 cut(s)	29, 940, 974
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	414
PagI	TCATGA	1 cut(s)	763
PctI	GAATGC	2 cut(s)	327, 1009
PfeI	GAWTC	4 cut(s)	275, 341, 830, 1030
PkrI	GCNGC	5 cut(s)	199, 508, 577, 600, 1062
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
PshAI	GACNNNNGTC	1 cut(s)	1089
PsiI	TTATAA	2 cut(s)	855, 1151
Psp6I	CCWGG	5 cut(s)	192, 658, 1087, 1107, 1207
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	5 cut(s)	192, 658, 1087, 1107, 1207
PspN4I	GGNNCC	2 cut(s)	96, 1086
PspPI	GGNCC	3 cut(s)	623, 731, 1084
PsuI	RGATCY	1 cut(s)	912
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	992, 1187
RsaNI	GTAC	2 cut(s)	991, 1186
RseI	CAYNNNNRTG	3 cut(s)	374, 699, 825
SaqAI	TTAA	3 cut(s)	771, 927, 1076
SatI	GCNGC	5 cut(s)	198, 507, 576, 599, 1061
Sau3AI	GATC	5 cut(s)	313, 517, 912, 1115, 1204
Sau96I	GGNCC	3 cut(s)	623, 731, 1084
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	6 cut(s)	194, 660, 962, 1089, 1109, 1209
SduI	GDGCHC	1 cut(s)	1167
SfaNI	GCATC	2 cut(s)	493, 1047
SfcI	CTRYAG	1 cut(s)	1248
Sfr274I	CTCGAG	1 cut(s)	414
SinI	GGWCC	3 cut(s)	623, 731, 1084
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	3 cut(s)	374, 699, 825
SmlI	CTYRAG	3 cut(s)	414, 476, 1241
SmoI	CTYRAG	3 cut(s)	414, 476, 1241
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	8 cut(s)	4, 10, 534, 717, 850, 856, 919, 1077
SspMI	CTAG	4 cut(s)	210, 279, 816, 1273
StyD4I	CCNGG	6 cut(s)	192, 658, 960, 1087, 1107, 1207
TaaI	ACNGT	2 cut(s)	1185, 1249
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	4 cut(s)	312, 415, 636, 1013
TaqII	GACCGA	2 cut(s)	321, 748
TasI	AATT	8 cut(s)	4, 10, 534, 717, 850, 856, 919, 1077
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	4 cut(s)	275, 341, 830, 1030
Tru1I	TTAA	3 cut(s)	771, 927, 1076
Tru9I	TTAA	3 cut(s)	771, 927, 1076
TscAI	CASTG	1 cut(s)	1176
TseFI	GTSAC	3 cut(s)	29, 940, 974
TseI	GCWGC	5 cut(s)	197, 506, 575, 598, 1060
Tsp45I	GTSAC	3 cut(s)	29, 940, 974
TspDTI	ATGAA	5 cut(s)	17, 131, 146, 240, 810
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	1176
VneI	GTGCAC	1 cut(s)	1163
VpaK11BI	GGWCC	3 cut(s)	623, 731, 1084
XapI	RAATTY	2 cut(s)	4, 534
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	414
XspI	CTAG	4 cut(s)	210, 279, 816, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.