Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

67701052 .. 67703922

Gene Structure 2871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGATTGGTTTTGATCGCATGAGTGCTATGGATTCTTCTTCGTCTTCTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCGTCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCATTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGCAAGTTCCAGTTGCCGTGAAAAGTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAAGTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACGGGCAATCACCAGGTCATTGTTAGTGACAAAACACCCTTGTACTTTCAGCATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACGGCAGACCTGGAAAGATCTCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTTCACACACTGAGAAAGCCACAGTACCAGTTGTGTTATATTGATCCTGGCATTTCAAGTGGAGATGAAGTGGAGTTGCTCAAGACTCTAGATAGTGTTTTTCTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

449

Amino Acids

50.86

Weight (kDa)

6.66

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	125 - 234	3.4e-26	Peptidase family C78
Peptidase_C78	PF07910	316 - 424	4.6e-16	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	930, 1226
AclI	AACGTT	1 cut(s)	1014
AclWI	GGATC	2 cut(s)	995, 1274
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	1217
AfaI	GTAC	2 cut(s)	1067, 1262
AfiI	CCNNNNNNNGG	1 cut(s)	1101
AgsI	TTSAA	9 cut(s)	89, 119, 308, 622, 741, 951, 1109, 1293, 1343
AjnI	CCWGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	2 cut(s)	459, 584
AluI	AGCT	2 cut(s)	459, 584
Alw26I	GTCTC	2 cut(s)	204, 479
AlwI	GGATC	2 cut(s)	995, 1274
Ama87I	CYCGRG	1 cut(s)	489
ApeKI	GCWGC	5 cut(s)	272, 581, 650, 673, 1135
ApoI	RAATTY	1 cut(s)	609
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspS9I	GGNCC	3 cut(s)	698, 806, 1159
AsuHPI	GGTGA	2 cut(s)	914, 1025
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	3 cut(s)	698, 806, 1159
AxyI	CCTNAGG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	259, 593, 637, 660, 1147
BccI	CCATC	9 cut(s)	82, 313, 540, 541, 621, 805, 1001, 1073, 1206
BceAI	ACGGC	3 cut(s)	107, 852, 1191
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	204, 479
BfaI	CTAG	5 cut(s)	285, 354, 891, 1325, 1348
BglII	AGATCT	1 cut(s)	1190
BisI	GCNGC	5 cut(s)	273, 582, 651, 674, 1136
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	5 cut(s)	274, 583, 652, 675, 1137
Bme1390I	CCNGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
Bme18I	GGWCC	3 cut(s)	698, 806, 1159
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	698, 806, 1159
BmiI	GGNNCC	2 cut(s)	171, 1161
BmrFI	CCNGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
BmsI	GCATC	2 cut(s)	568, 1122
BoxI	GACNNNNGTC	1 cut(s)	1164
BpiI	GAAGAC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	2 cut(s)	572, 1301
BsaJI	CCNNGG	1 cut(s)	1162
BsaXI	ACNNNNNCTCC	2 cut(s)	1290, 1320
Bsc4I	CCNNNNNNNGG	1 cut(s)	1101
Bse1I	ACTGG	3 cut(s)	135, 861, 1264
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
BseDI	CCNNGG	1 cut(s)	1162
BseGI	GGATG	4 cut(s)	74, 444, 1137, 1217
BseLI	CCNNNNNNNGG	1 cut(s)	1101
BseMII	CTCAG	3 cut(s)	320, 402, 1238
BseNI	ACTGG	3 cut(s)	135, 861, 1264
BseRI	GAGGAG	1 cut(s)	1248
BseXI	GCAGC	5 cut(s)	259, 593, 637, 660, 1147
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	1101
BsmAI	GTCTC	2 cut(s)	204, 479
BsmI	GAATGC	2 cut(s)	402, 1084
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
Bsp1720I	GCTNAGC	1 cut(s)	455
BspCNI	CTCAG	3 cut(s)	321, 403, 1239
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	2 cut(s)	171, 1161
BspPI	GGATC	2 cut(s)	995, 1274
BsrI	ACTGG	3 cut(s)	135, 861, 1264
BssECI	CCNNGG	1 cut(s)	1162
BssMI	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
Bst2UI	CCWGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
Bst4CI	ACNGT	3 cut(s)	70, 186, 1260
Bst6I	CTCTTC	3 cut(s)	735, 747, 776
BstC8I	GCNNGC	3 cut(s)	96, 586, 678
BstDEI	CTNAG	5 cut(s)	329, 411, 455, 702, 1247
BstF5I	GGATG	4 cut(s)	74, 444, 1137, 1217
BstKTI	GATC	7 cut(s)	16, 391, 410, 595, 990, 1193, 1282
BstMAI	GTCTC	2 cut(s)	204, 479
BstMBI	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
BstMWI	GCNNNNNNNGC	1 cut(s)	1081
BstNI	CCWGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
BstNSI	RCATGY	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	1164
BstSCI	CCNGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
BstV1I	GCAGC	5 cut(s)	259, 593, 637, 660, 1147
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	987, 1190
BstYI	RGATCY	2 cut(s)	987, 1190
Bsu36I	CCTNAGG	1 cut(s)	702
BtsCI	GGATG	4 cut(s)	74, 444, 1137, 1217
BtsIMutI	CAGTG	1 cut(s)	1244
Cac8I	GCNNGC	3 cut(s)	96, 586, 678
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	698, 806, 1159
CsiI	ACCWGGT	1 cut(s)	1035
Csp6I	GTAC	2 cut(s)	1066, 1261
CspCI	CAANNNNNGTGG	2 cut(s)	669, 704
CviAII	CATG	9 cut(s)	19, 95, 190, 233, 247, 299, 839, 979, 1076
CviQI	GTAC	2 cut(s)	1066, 1261
DdeI	CTNAG	5 cut(s)	329, 411, 455, 702, 1247
DpnI	GATC	7 cut(s)	15, 390, 409, 594, 989, 1192, 1281
DpnII	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
Eam1104I	CTCTTC	3 cut(s)	735, 747, 776
EarI	CTCTTC	3 cut(s)	735, 747, 776
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	3 cut(s)	698, 806, 1159
Eco57I	CTGAAG	1 cut(s)	1217
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
EcoRV	GATATC	1 cut(s)	529
FaeI	CATG	9 cut(s)	22, 98, 193, 236, 250, 302, 842, 982, 1079
FatI	CATG	9 cut(s)	18, 94, 189, 232, 246, 298, 838, 978, 1075
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	5 cut(s)	273, 582, 651, 674, 1136
FokI	GGATG	4 cut(s)	61, 431, 1144, 1224
Fsp4HI	GCNGC	5 cut(s)	273, 582, 651, 674, 1136
FspBI	CTAG	5 cut(s)	285, 354, 891, 1325, 1348
GluI	GCNGC	5 cut(s)	273, 582, 651, 674, 1136
GsaI	CCCAGC	1 cut(s)	157
Hin1II	CATG	9 cut(s)	22, 98, 193, 236, 250, 302, 842, 982, 1079
HinfI	GANTC	7 cut(s)	32, 416, 487, 835, 905, 1105, 1321
HphI	GGTGA	2 cut(s)	914, 1025
Hpy166II	GTNNAC	2 cut(s)	806, 1240
Hpy188I	TCNGA	5 cut(s)	209, 399, 412, 592, 1197
Hpy8I	GTNNAC	2 cut(s)	806, 1240
HpyAV	CCTTC	4 cut(s)	64, 183, 302, 1192
HpyCH4III	ACNGT	3 cut(s)	70, 186, 1260
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	4 cut(s)	475, 512, 581, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1081
HpyF3I	CTNAG	5 cut(s)	329, 411, 455, 702, 1247
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	9 cut(s)	22, 98, 193, 236, 250, 302, 842, 982, 1079
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	5 cut(s)	259, 593, 637, 660, 1147
LweI	GCATC	2 cut(s)	568, 1122
MabI	ACCWGGT	1 cut(s)	1035
MaeI	CTAG	5 cut(s)	285, 354, 891, 1325, 1348
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	5 cut(s)	104, 440, 1010, 1015, 1049
MalI	GATC	7 cut(s)	15, 390, 409, 594, 989, 1192, 1281
MboI	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
MboII	GAAGA	8 cut(s)	27, 30, 36, 131, 168, 722, 764, 793
MflI	RGATCY	2 cut(s)	987, 1190
MluCI	AATT	7 cut(s)	303, 609, 792, 925, 931, 994, 1152
MlyI	GAGTC	3 cut(s)	481, 844, 1315
MnlI	CCTC	8 cut(s)	88, 106, 244, 406, 748, 777, 1202, 1226
MseI	TTAA	3 cut(s)	846, 1002, 1151
MslI	CAYNNNNRTG	3 cut(s)	449, 774, 900
MspA1I	CMGCKG	1 cut(s)	584
MspR9I	CCNGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
Mva1269I	GAATGC	2 cut(s)	402, 1084
MvaI	CCWGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
MwoI	GCNNNNNNNGC	1 cut(s)	1081
NdeII	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
NlaIII	CATG	9 cut(s)	22, 98, 193, 236, 250, 302, 842, 982, 1079
NlaIV	GGNNCC	2 cut(s)	171, 1161
NmuCI	GTSAC	2 cut(s)	104, 1049
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	489
PagI	TCATGA	1 cut(s)	838
PctI	GAATGC	2 cut(s)	402, 1084
PfeI	GAWTC	4 cut(s)	32, 416, 905, 1105
PkrI	GCNGC	5 cut(s)	274, 583, 652, 675, 1137
PleI	GAGTC	3 cut(s)	481, 843, 1315
PpsI	GAGTC	3 cut(s)	481, 843, 1315
PshAI	GACNNNNGTC	1 cut(s)	1164
PsiI	TTATAA	2 cut(s)	930, 1226
Psp1406I	AACGTT	1 cut(s)	1014
Psp6I	CCWGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
PspN4I	GGNNCC	2 cut(s)	171, 1161
PspPI	GGNCC	3 cut(s)	698, 806, 1159
PsuI	RGATCY	2 cut(s)	987, 1190
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	2 cut(s)	1067, 1262
RsaNI	GTAC	2 cut(s)	1066, 1261
RseI	CAYNNNNRTG	3 cut(s)	449, 774, 900
SaqAI	TTAA	3 cut(s)	846, 1002, 1151
SatI	GCNGC	5 cut(s)	273, 582, 651, 674, 1136
Sau3AI	GATC	7 cut(s)	13, 388, 407, 592, 987, 1190, 1279
Sau96I	GGNCC	3 cut(s)	698, 806, 1159
SchI	GAGTC	3 cut(s)	481, 844, 1315
ScrFI	CCNGG	6 cut(s)	269, 735, 1037, 1164, 1184, 1284
SexAI	ACCWGGT	1 cut(s)	1035
SfaNI	GCATC	2 cut(s)	568, 1122
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	3 cut(s)	698, 806, 1159
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	3 cut(s)	449, 774, 900
SmlI	CTYRAG	3 cut(s)	489, 551, 1316
SmoI	CTYRAG	3 cut(s)	489, 551, 1316
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	7 cut(s)	303, 609, 792, 925, 931, 994, 1152
SspMI	CTAG	5 cut(s)	285, 354, 891, 1325, 1348
StyD4I	CCNGG	6 cut(s)	267, 733, 1035, 1162, 1182, 1282
TaaI	ACNGT	3 cut(s)	70, 186, 1260
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	5 cut(s)	406, 490, 711, 878, 1088
TaqII	GACCGA	1 cut(s)	823
TasI	AATT	7 cut(s)	303, 609, 792, 925, 931, 994, 1152
TatI	WGTACW	1 cut(s)	1065
TfiI	GAWTC	4 cut(s)	32, 416, 905, 1105
Tru1I	TTAA	3 cut(s)	846, 1002, 1151
Tru9I	TTAA	3 cut(s)	846, 1002, 1151
TscAI	CASTG	1 cut(s)	1251
TseFI	GTSAC	2 cut(s)	104, 1049
TseI	GCWGC	5 cut(s)	272, 581, 650, 673, 1135
Tsp45I	GTSAC	2 cut(s)	104, 1049
TspDTI	ATGAA	4 cut(s)	206, 221, 315, 1317
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	1251
VpaK11BI	GGWCC	3 cut(s)	698, 806, 1159
XapI	RAATTY	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	1324
XceI	RCATGY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	5 cut(s)	285, 354, 891, 1325, 1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.