Rroxscaffold_4G00277380

Zinc finger with UFM1-specific peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007168
Physical Location & Seq
Reverse (-)
835600 .. 837533
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277380.1

Sequence Viewer

Length: 1086 bp
ATGGATTCTTCTTCTTCTTCGTCTTGTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAGCTAGCTATGGACTTGGAGTTTGCCCATCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGGGAGTGTTTGGGAAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGCAACTCGAACCATATTATCCTTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGAAGTCATGATATTAACCAAGCGAGTTCCAGTTGCCGTGAAAATTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGCTAGGAAAAGTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAATCGGCAATCACTGGGTCATTAGAACGGCGGACCTGGAAAGATCGCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTTCACACACTGAGAAAGCCACAGTACCAGGTAATGGCTAATGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

361

Amino Acids

40.87

Weight (kDa)

8.44

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C78 PF07910 112 - 209 3.2e-25 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 855, 1025
AccB7I CCANNNNNTGG 1 cut(s) 1069
AciI CCGC 1 cut(s) 977
AclI AACGTT 1 cut(s) 939
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 2 cut(s) 534, 799
AcuI CTGAAG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 1061
AfiI CCNNNNNNNGG 1 cut(s) 1069
AgsI TTSAA 6 cut(s) 68, 98, 287, 547, 666, 876
AjnI CCWGG 4 cut(s) 246, 658, 981, 1062
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 4 cut(s) 109, 113, 384, 509
AluI AGCT 4 cut(s) 109, 113, 384, 509
Alw26I GTCTC 2 cut(s) 183, 404
AlwI GGATC 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 414
ApeKI GCWGC 5 cut(s) 106, 251, 506, 575, 598
ApoI RAATTY 2 cut(s) 534, 799
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspS9I GGNCC 3 cut(s) 623, 731, 979
AsuHPI GGTGA 1 cut(s) 839
AsuNHI GCTAGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 3 cut(s) 623, 731, 979
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 5 cut(s) 118, 238, 518, 562, 585
BceAI ACGGC 3 cut(s) 86, 777, 990
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 4 cut(s) 248, 660, 983, 1064
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 183, 404
BfaI CTAG 4 cut(s) 110, 264, 816, 840
BisI GCNGC 5 cut(s) 107, 252, 507, 576, 599
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 5 cut(s) 108, 253, 508, 577, 600
Bme1390I CCNGG 4 cut(s) 248, 660, 983, 1064
Bme18I GGWCC 3 cut(s) 623, 731, 979
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 3 cut(s) 623, 731, 979
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 4 cut(s) 248, 660, 983, 1064
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 970
Bpu10I CCTNAGC 2 cut(s) 308, 627
Bpu1102I GCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 497
Bsc4I CCNNNNNNNGG 1 cut(s) 1069
Bse1I ACTGG 2 cut(s) 786, 965
BseBI CCWGG 4 cut(s) 248, 660, 983, 1064
BseGI GGATG 4 cut(s) 53, 164, 369, 1016
BseLI CCNNNNNNNGG 1 cut(s) 1069
BseMII CTCAG 3 cut(s) 299, 327, 1037
BseNI ACTGG 2 cut(s) 786, 965
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 5 cut(s) 118, 238, 518, 562, 585
BsgI GTGCAG 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 1069
BsmAI GTCTC 2 cut(s) 183, 404
BsmI GAATGC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 4 cut(s) 332, 517, 912, 989
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 1 cut(s) 977
BspCNI CTCAG 3 cut(s) 300, 328, 1038
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 1 cut(s) 150
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 920
BsrI ACTGG 2 cut(s) 786, 965
BssMI GATC 4 cut(s) 332, 517, 912, 989
Bst2UI CCWGG 4 cut(s) 248, 660, 983, 1064
Bst4CI ACNGT 2 cut(s) 49, 1059
Bst6I CTCTTC 3 cut(s) 660, 672, 701
BstC8I GCNNGC 4 cut(s) 75, 111, 511, 603
BstDEI CTNAG 5 cut(s) 308, 336, 380, 627, 1046
BstF5I GGATG 4 cut(s) 53, 164, 369, 1016
BstKTI GATC 4 cut(s) 335, 520, 915, 992
BstMAI GTCTC 2 cut(s) 183, 404
BstMBI GATC 4 cut(s) 332, 517, 912, 989
BstNI CCWGG 4 cut(s) 248, 660, 983, 1064
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 246, 658, 981, 1062
BstV1I GCAGC 5 cut(s) 118, 238, 518, 562, 585
BstX2I RGATCY 1 cut(s) 912
BstYI RGATCY 1 cut(s) 912
BtsCI GGATG 4 cut(s) 53, 164, 369, 1016
BtsIMutI CAGTG 2 cut(s) 958, 1043
Cac8I GCNNGC 4 cut(s) 75, 111, 511, 603
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 3 cut(s) 623, 731, 979
CsiI ACCWGGT 1 cut(s) 1062
Csp6I GTAC 1 cut(s) 1060
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 7 cut(s) 74, 169, 212, 226, 278, 764, 904
CviQI GTAC 1 cut(s) 1060
DdeI CTNAG 5 cut(s) 308, 336, 380, 627, 1046
DpnI GATC 4 cut(s) 334, 519, 914, 991
DpnII GATC 4 cut(s) 332, 517, 912, 989
Eam1104I CTCTTC 3 cut(s) 660, 672, 701
EarI CTCTTC 3 cut(s) 660, 672, 701
EciI GGCGGA 1 cut(s) 992
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 623, 731, 979
Eco57I CTGAAG 1 cut(s) 1016
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 4 cut(s) 246, 658, 981, 1062
EcoRV GATATC 1 cut(s) 454
FaeI CATG 7 cut(s) 77, 172, 215, 229, 281, 767, 907
FatI CATG 7 cut(s) 73, 168, 211, 225, 277, 763, 903
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 5 cut(s) 107, 252, 507, 576, 599
FokI GGATG 4 cut(s) 40, 151, 356, 1023
Fsp4HI GCNGC 5 cut(s) 107, 252, 507, 576, 599
FspBI CTAG 4 cut(s) 110, 264, 816, 840
GluI GCNGC 5 cut(s) 107, 252, 507, 576, 599
Hin1II CATG 7 cut(s) 77, 172, 215, 229, 281, 767, 907
HinfI GANTC 4 cut(s) 5, 341, 412, 830
HphI GGTGA 1 cut(s) 839
Hpy166II GTNNAC 2 cut(s) 731, 1039
Hpy188I TCNGA 3 cut(s) 188, 337, 517
Hpy188III TCNNGA 6 cut(s) 416, 449, 685, 764, 861, 916
Hpy8I GTNNAC 2 cut(s) 731, 1039
HpyAV CCTTC 5 cut(s) 43, 162, 281, 660, 991
HpyCH4III ACNGT 2 cut(s) 49, 1059
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 3 cut(s) 400, 437, 506
HpyF3I CTNAG 5 cut(s) 308, 336, 380, 627, 1046
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 7 cut(s) 77, 172, 215, 229, 281, 767, 907
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 4 cut(s) 332, 517, 912, 989
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 5 cut(s) 118, 238, 518, 562, 585
LweI GCATC 1 cut(s) 493
MabI ACCWGGT 1 cut(s) 1062
MaeI CTAG 4 cut(s) 110, 264, 816, 840
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 83, 365, 935, 940
MalI GATC 4 cut(s) 334, 519, 914, 991
MboI GATC 4 cut(s) 332, 517, 912, 989
MboII GAAGA 8 cut(s) 3, 6, 9, 110, 147, 647, 689, 718
MflI RGATCY 1 cut(s) 912
MluCI AATT 7 cut(s) 282, 534, 717, 799, 850, 856, 919
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 9 cut(s) 67, 85, 223, 303, 331, 673, 702, 1001, 1025
MseI TTAA 2 cut(s) 771, 927
MslI CAYNNNNRTG 3 cut(s) 374, 699, 825
MspA1I CMGCKG 1 cut(s) 509
MspR9I CCNGG 4 cut(s) 248, 660, 983, 1064
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 4 cut(s) 248, 660, 983, 1064
NdeII GATC 4 cut(s) 332, 517, 912, 989
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 7 cut(s) 77, 172, 215, 229, 281, 767, 907
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 1 cut(s) 763
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 5, 341, 830
PflMI CCANNNNNTGG 1 cut(s) 1069
PkrI GCNGC 5 cut(s) 108, 253, 508, 577, 600
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PsiI TTATAA 2 cut(s) 855, 1025
Psp1406I AACGTT 1 cut(s) 939
Psp6I CCWGG 4 cut(s) 246, 658, 981, 1062
PspGI CCWGG 4 cut(s) 246, 658, 981, 1062
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 3 cut(s) 623, 731, 979
PsuI RGATCY 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 1061
RsaNI GTAC 1 cut(s) 1060
RseI CAYNNNNRTG 3 cut(s) 374, 699, 825
SaqAI TTAA 2 cut(s) 771, 927
SatI GCNGC 5 cut(s) 107, 252, 507, 576, 599
Sau3AI GATC 4 cut(s) 332, 517, 912, 989
Sau96I GGNCC 3 cut(s) 623, 731, 979
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 4 cut(s) 248, 660, 983, 1064
SexAI ACCWGGT 1 cut(s) 1062
SfaNI GCATC 1 cut(s) 493
Sfr274I CTCGAG 1 cut(s) 414
SinI GGWCC 3 cut(s) 623, 731, 979
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 3 cut(s) 374, 699, 825
SmlI CTYRAG 2 cut(s) 414, 476
SmoI CTYRAG 2 cut(s) 414, 476
SphI GCATGC 1 cut(s) 77
Sse9I AATT 7 cut(s) 282, 534, 717, 799, 850, 856, 919
SsiI CCGC 1 cut(s) 977
SspMI CTAG 4 cut(s) 110, 264, 816, 840
StyD4I CCNGG 4 cut(s) 246, 658, 981, 1062
TaaI ACNGT 2 cut(s) 49, 1059
TaiI ACGT 1 cut(s) 942
TaqI TCGA 4 cut(s) 331, 415, 636, 803
TaqII GACCGA 1 cut(s) 748
TasI AATT 7 cut(s) 282, 534, 717, 799, 850, 856, 919
TfiI GAWTC 3 cut(s) 5, 341, 830
Tru1I TTAA 2 cut(s) 771, 927
Tru9I TTAA 2 cut(s) 771, 927
TscAI CASTG 2 cut(s) 965, 1050
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 5 cut(s) 106, 251, 506, 575, 598
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 185, 200, 294
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 965, 1050
Van91I CCANNNNNTGG 1 cut(s) 1069
VpaK11BI GGWCC 3 cut(s) 623, 731, 979
XapI RAATTY 2 cut(s) 534, 799
XceI RCATGY 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 414
XspI CTAG 4 cut(s) 110, 264, 816, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.