MD01G1231900.v1.1

Zinc finger with UFM1-specific peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007168
Physical Location & Seq
Forward (+)
32052541 .. 32054710
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1231900.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGGTAGCCCTAGTGATGAGAATTCAGGAAATAAGTTTACAAGGAAAAGCAAGGGTCATCAGGTTCTCATTGATTGGATCTGGAACTACTTTTCTGATAATAATTCCACCAAATCTGGCAATCATCAGGTCATTGTCAGTGACAAAACACCCTTGTACTTCCAACACGATGGACATTCGAGAATGATTGTTGGGATTCAAGTCAAGGGTCAACGTAATGGCGTGCAGCAACACAATCTCTTAATATTAGACCCTGGCCATAGAACGGCAGATCTGGAAAGATCACTAAGAGAAAAAGGTAGGATGGCAGAAGTTTGTAAAACGAGGGGTTCAGACACTGAAAAAGGCAAAATACCAGTTGTGCTATATCGATCCTGGAGTTGCAAGCGGGGAGGAAAAGGGGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

9.85

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C78 PF07910 15 - 104 7.2e-13 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 388
AclWI GGATC 2 cut(s) 86, 366
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 2 cut(s) 253, 374
AlwI GGATC 2 cut(s) 86, 366
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 22
BalI TGGCCA 1 cut(s) 258
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 164, 298
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 2 cut(s) 255, 376
BfaI CTAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 255, 376
BmrFI CCNGG 2 cut(s) 255, 376
BpmI CTGGAG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 255, 376
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 245
BshFI GGCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 4 cut(s) 78, 271, 281, 371
BspACI CCGC 1 cut(s) 388
BspANI GGCC 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 370
BspPI GGATC 2 cut(s) 86, 366
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 78, 271, 281, 371
Bst2UI CCWGG 2 cut(s) 255, 376
BstC8I GCNNGC 2 cut(s) 224, 386
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 81, 274, 284, 374
BstMBI GATC 4 cut(s) 78, 271, 281, 371
BstNI CCWGG 2 cut(s) 255, 376
BstSCI CCNGG 2 cut(s) 253, 374
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 78, 271
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 2 cut(s) 78, 271
Bsu15I ATCGAT 1 cut(s) 370
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 370
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 145, 336
Cac8I GCNNGC 2 cut(s) 224, 386
CaiI CAGNNNCTG 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 370
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 2 cut(s) 9, 258
CviKI_1 RGCY 2 cut(s) 9, 258
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 287
DpnI GATC 4 cut(s) 80, 273, 283, 373
DpnII GATC 4 cut(s) 78, 271, 281, 371
EaeI YGGCCR 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 253, 374
FaiI YATR 2 cut(s) 261, 367
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 39, 212
Hpy188I TCNGA 2 cut(s) 97, 334
Hpy188III TCNNGA 4 cut(s) 27, 82, 180, 275
Hpy8I GTNNAC 2 cut(s) 39, 212
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 226, 384
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 214
Kzo9I GATC 4 cut(s) 78, 271, 281, 371
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 140
MalI GATC 4 cut(s) 80, 273, 283, 373
MboI GATC 4 cut(s) 78, 271, 281, 371
MflI RGATCY 2 cut(s) 78, 271
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 2 cut(s) 22, 103
MluNI TGGCCA 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 2 cut(s) 318, 386
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 242, 409
Msp20I TGGCCA 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 255, 376
MvaI CCWGG 2 cut(s) 255, 376
NdeII GATC 4 cut(s) 78, 271, 281, 371
NmuCI GTSAC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 374
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 253, 374
PspGI CCWGG 2 cut(s) 253, 374
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 78, 271
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 242, 409
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 4 cut(s) 78, 271, 281, 371
ScrFI CCNGG 2 cut(s) 255, 376
SetI ASST 4 cut(s) 66, 132, 217, 301
Sse9I AATT 2 cut(s) 22, 103
SsiI CCGC 1 cut(s) 388
SspI AATATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 253, 374
TaiI ACGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 179, 370
TasI AATT 2 cut(s) 22, 103
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 242, 409
Tru9I TTAA 2 cut(s) 242, 409
TscAI CASTG 2 cut(s) 145, 343
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 140
TspRI CASTG 2 cut(s) 145, 343
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.