FvH4_7g33700

Zinc finger with UFM1-specific peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007168
Physical Location & Seq
Reverse (-)
23912080 .. 23914136
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33700.t1

Sequence Viewer

Length: 909 bp
ATGAAGTGGCAAGGCATCACAGCCCAAGCTACCAACCCCATTCTCCAGTTGACATACATGCTCACAACGGTTGCAATCAGTATGGAGGAAATGCACTGGACAAGGACAGACATCCGGCATGCGAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTTTGGACTTGGAGTTTGCCCAGCAACTTGCTTTTGCACCTTATTCTCCACCATCCATGCATGGCAAGAGACTCGAGATGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAACTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGGTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAGAAGATGGATTGGAACAACTGAATGTGCTGCCCTTTTCCTTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCCAAGGAACTCGAACCATATTATCTCTCTCTTCCTGGTTCAAGTCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGAAAGAGGAAAGCAATTCAGGTTTGTGGACCAATGGATAGATATTTGCCGGAAAGGAGTCATGATATTAACCAAGCGAGTCCCAGTTGCCATGAAAAGTCGAGTTGTTCTACTAGCCAGAAAGGTGACTCTTGGTGTAGGAAAAGTCATTATAATTCCGGAAATAAATTTTTCAGGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAGAACCGGCAACCACCGGGTGATTGTTAGTGACAAAACGATCGGGACTGATGCAATGATTTTGTTTCAGCTGTGTTATATTGATCCTGGCATTGCAAGTGGAGATGAAGTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

303

Amino Acids

34.3

Weight (kDa)

6.31

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C78 PF07910 96 - 146 1.8e-06 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 671
AclI AACGTT 1 cut(s) 750
AclWI GGATC 2 cut(s) 731, 833
AcsI RAATTY 2 cut(s) 345, 680
AdeI CACNNNGTG 1 cut(s) 775
AgsI TTSAA 2 cut(s) 143, 477
AjnI CCWGG 2 cut(s) 469, 841
AluBI AGCT 4 cut(s) 29, 320, 826, 904
AluI AGCT 4 cut(s) 29, 320, 826, 904
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 2 cut(s) 731, 833
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 671
ApeKI GCWGC 3 cut(s) 317, 386, 409
ApoI RAATTY 2 cut(s) 345, 680
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 2 cut(s) 434, 542
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 650, 787
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 434, 542
BanII GRGCYC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 3 cut(s) 329, 373, 396
BccI CCATC 4 cut(s) 217, 282, 357, 737
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 2 cut(s) 471, 843
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 882
BisI GCNGC 3 cut(s) 318, 387, 410
BlsI GCNGC 3 cut(s) 319, 388, 411
Bme1390I CCNGG 3 cut(s) 471, 773, 843
Bme18I GGWCC 2 cut(s) 434, 542
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 434, 542
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 3 cut(s) 471, 773, 843
BmrI ACTGGG 1 cut(s) 591
BmsI GCATC 3 cut(s) 24, 304, 796
BmuI ACTGGG 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 3 cut(s) 308, 376, 860
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 4 cut(s) 46, 101, 159, 597
Bse3DI GCAATG 2 cut(s) 816, 846
BseAI TCCGGA 1 cut(s) 671
BseBI CCWGG 2 cut(s) 471, 843
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 111, 209
BseMI GCAATG 2 cut(s) 816, 846
BseNI ACTGG 4 cut(s) 46, 101, 159, 597
BseXI GCAGC 3 cut(s) 329, 373, 396
BseYI CCCAGC 2 cut(s) 177, 320
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 798
BsiEI CGRYCG 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 906
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 5 cut(s) 115, 563, 672, 762, 772
BslFI GGGAC 3 cut(s) 420, 579, 814
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 3 cut(s) 420, 579, 814
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 906
Bsp13I TCCGGA 1 cut(s) 671
Bsp143I GATC 4 cut(s) 328, 723, 795, 838
BspEI TCCGGA 1 cut(s) 671
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 2 cut(s) 731, 833
BsrDI GCAATG 2 cut(s) 816, 846
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 4 cut(s) 46, 101, 159, 597
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 4 cut(s) 328, 723, 795, 838
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 471, 843
Bst4CI ACNGT 2 cut(s) 70, 883
Bst6I CTCTTC 2 cut(s) 471, 483
BstC8I GCNNGC 2 cut(s) 120, 414
BstF5I GGATG 2 cut(s) 111, 209
BstKTI GATC 4 cut(s) 331, 726, 798, 841
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 4 cut(s) 328, 723, 795, 838
BstMCI CGRYCG 1 cut(s) 798
BstNI CCWGG 2 cut(s) 471, 843
BstNSI RCATGY 2 cut(s) 61, 122
BstSCI CCNGG 3 cut(s) 469, 771, 841
BstSFI CTRYAG 1 cut(s) 882
BstV1I GCAGC 3 cut(s) 329, 373, 396
BstX2I RGATCY 1 cut(s) 723
BstYI RGATCY 1 cut(s) 723
BtsCI GGATG 2 cut(s) 111, 209
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 120, 414
CciI TCATGA 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 2 cut(s) 434, 542
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 7 cut(s) 58, 119, 214, 218, 575, 605, 715
CviJI RGCY 9 cut(s) 23, 29, 158, 320, 354, 409, 630, 826, 904
CviKI_1 RGCY 9 cut(s) 23, 29, 158, 320, 354, 409, 630, 826, 904
DpnI GATC 4 cut(s) 330, 725, 797, 840
DpnII GATC 4 cut(s) 328, 723, 795, 838
DraIII CACNNNGTG 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 471, 483
EarI CTCTTC 2 cut(s) 471, 483
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 906
Eco32I GATATC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 434, 542
Eco53kI GAGCTC 1 cut(s) 904
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 469, 841
EcoRV GATATC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 906
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 7 cut(s) 61, 122, 217, 221, 578, 608, 718
FaqI GGGAC 3 cut(s) 420, 579, 814
FatI CATG 7 cut(s) 57, 118, 213, 217, 574, 604, 714
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 318, 387, 410
FokI GGATG 2 cut(s) 98, 196
FriOI GRGCYC 1 cut(s) 906
Fsp4HI GCNGC 3 cut(s) 318, 387, 410
FspBI CTAG 1 cut(s) 627
GluI GCNGC 3 cut(s) 318, 387, 410
GsaI CCCAGC 2 cut(s) 181, 324
GsuI CTGGAG 1 cut(s) 29
HapII CCGG 5 cut(s) 115, 563, 672, 762, 772
Hin1II CATG 7 cut(s) 61, 122, 217, 221, 578, 608, 718
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 4 cut(s) 228, 571, 592, 641
HpaII CCGG 5 cut(s) 115, 563, 672, 762, 772
HphI GGTGA 2 cut(s) 650, 787
Hpy166II GTNNAC 2 cut(s) 51, 542
Hpy188I TCNGA 1 cut(s) 328
Hpy8I GTNNAC 2 cut(s) 51, 542
HpyCH4III ACNGT 2 cut(s) 70, 883
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 8 cut(s) 74, 94, 194, 217, 253, 317, 809, 851
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 7 cut(s) 61, 122, 217, 221, 578, 608, 718
Kpn2I TCCGGA 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 328, 723, 795, 838
Lsp1109I GCAGC 3 cut(s) 329, 373, 396
LweI GCATC 3 cut(s) 24, 304, 796
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 5 cut(s) 128, 638, 746, 751, 785
MalI GATC 4 cut(s) 330, 725, 797, 840
MboI GATC 4 cut(s) 328, 723, 795, 838
MboII GAAGA 4 cut(s) 155, 372, 458, 500
MflI RGATCY 1 cut(s) 723
MhlI GDGCHC 1 cut(s) 906
MluCI AATT 5 cut(s) 345, 528, 667, 680, 730
MlyI GAGTC 4 cut(s) 222, 580, 601, 635
MnlI CCTC 4 cut(s) 79, 130, 484, 513
Mph1103I ATGCAT 1 cut(s) 219
MroI TCCGGA 1 cut(s) 671
MseI TTAA 2 cut(s) 582, 738
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 2 cut(s) 320, 826
MspI CCGG 5 cut(s) 115, 563, 672, 762, 772
MspR9I CCNGG 3 cut(s) 471, 773, 843
MvaI CCWGG 2 cut(s) 471, 843
NciI CCSGG 1 cut(s) 773
NdeII GATC 4 cut(s) 328, 723, 795, 838
NlaIII CATG 7 cut(s) 61, 122, 217, 221, 578, 608, 718
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 3 cut(s) 128, 638, 785
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 2 cut(s) 61, 122
PaeI GCATGC 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 230
PagI TCATGA 1 cut(s) 574
PkrI GCNGC 3 cut(s) 319, 388, 411
Ple19I CGATCG 1 cut(s) 798
PleI GAGTC 4 cut(s) 222, 579, 600, 635
PpsI GAGTC 4 cut(s) 222, 579, 600, 635
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 906
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 469, 841
PspFI CCCAGC 2 cut(s) 177, 320
PspGI CCWGG 2 cut(s) 469, 841
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 434, 542
PsuI RGATCY 1 cut(s) 723
PvuI CGATCG 1 cut(s) 798
PvuII CAGCTG 2 cut(s) 320, 826
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 906
SaqAI TTAA 2 cut(s) 582, 738
SatI GCNGC 3 cut(s) 318, 387, 410
Sau3AI GATC 4 cut(s) 328, 723, 795, 838
Sau96I GGNCC 2 cut(s) 434, 542
SchI GAGTC 4 cut(s) 222, 580, 601, 635
ScrFI CCNGG 3 cut(s) 471, 773, 843
SduI GDGCHC 1 cut(s) 906
SfaNI GCATC 3 cut(s) 24, 304, 796
SfcI CTRYAG 1 cut(s) 882
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 2 cut(s) 434, 542
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 5 cut(s) 230, 287, 355, 875, 899
SmoI CTYRAG 5 cut(s) 230, 287, 355, 875, 899
SphI GCATGC 1 cut(s) 122
Sse9I AATT 5 cut(s) 345, 528, 667, 680, 730
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 906
StyD4I CCNGG 3 cut(s) 469, 771, 841
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 70, 883
TaiI ACGT 1 cut(s) 753
TaqI TCGA 3 cut(s) 231, 447, 614
TasI AATT 5 cut(s) 345, 528, 667, 680, 730
Tru1I TTAA 2 cut(s) 582, 738
Tru9I TTAA 2 cut(s) 582, 738
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 3 cut(s) 128, 638, 785
TseI GCWGC 3 cut(s) 317, 386, 409
Tsp45I GTSAC 3 cut(s) 128, 638, 785
TspDTI ATGAA 3 cut(s) 17, 621, 876
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 434, 542
XapI RAATTY 2 cut(s) 345, 680
XceI RCATGY 2 cut(s) 61, 122
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.