Rorug01G0440600

Zinc finger with UFM1-specific peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007168
Physical Location & Seq
Forward (+)
53866073 .. 53867416
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0440600.1

Sequence Viewer

Length: 1344 bp
ATGCATACCAACTTCAATAGGGTGGTAAACCCTAGCCTCCAACAACACATTAGAGCTAGTGAGGTACTCACAGGTTCAGATTCAATACATCATCAATGGGAGTGTCTTGATCTGGACGTGGCTTGTTTGGTTCTTGACAAGTTATTGGAATCCATCGACCGGGCTAGTTTCCGTGTGGTTTGCAAAGAATGGGGTCGTCTTGCAAGAGCCTATAGGCGATTGTGTAAGCCAAAGGTGCTTCCCATGCTCCTAATCCCTGCAGACAACCATCACTACTATGGAAAGAAGAACTCACGACAATCACTAGAGACTATTATGCACCAAGGATTACTGTACAGTGTTTCGAAACGAAGAATCTACCGGCGTGTGCAGAGTATTATGCTCCCATCATTAGGTGAACCAGAACCAGAAACTAGATATAGCAGATACTATCGTGGATGTGGGCATGGTTGGGTGGCCATGATAGACACGGATGTGATATTTGGAAGTGAAACGATTATAACTCTCGTCAACCCTTTCACAACAGTAATATTGCCGTCTTTACCTCCTCTGAAACGCTATAACTCGGGTATCCCAAAAGTTATCTTGTCCGAAGATCCGACTTCGAATCCAGACCATTACGTGGTTGTAGCTTTCGCTGATGATTATGCCTCCATGGATTTCATCAAAGGAAGACAAGGTTGGTATCATATCGATTGCAGACCATACCTCGCAGAGCCTGATGATTACAATTTTACTGATGCTATATTTTACGGAGGCCAAATCTACATGGCTGATAGTTATTACGGGATAATTGCGGTGTTTGATTATAAAAGCAAACAACAAGTATACTTGGAAAAGATATACACACCACCGCCACCTGCTGCACGAGATGAATCCGAACGGGCATATCTTGTGGAATCAATCAATGGAGACATATTCTATATTCGACGGTTAACAACGTCAGGGTATTATAGTGATCTGACCAAGAGTTTTAGGGTTTTTAAGGTGGTGCTCAATGGAAGCACTGTGGAGCATGTTGAGGTAAAGAGCATTGGAGATGAGGCTTTGTTTGTTGGTGACAGTCATTCATTATCTTTTTTGGCTTCAAGCTCTTCAGGGTGTCAACCAAATTCAATTCACTTCACAGATGATTCGATAAATTTTTCCAAATATTTAGATAACTATATACGACGAGTCATCACAATAAAATGCTACGAGGACGAGGACGAGGACGAATATCAAGTACGAGCTGATACGGGTATCTTCCATTTAGAGGATGGAACTATTAGCCGATATTACCTAAAATGTTTTGACGATGACCTGCTACCACCCGCTTTTTGGATCATACCACCGGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

447

Amino Acids

51.39

Weight (kDa)

5.71

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 128 - 382 6.9e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 500, 810
AarI CACCTGC 1 cut(s) 868
Acc36I ACCTGC 2 cut(s) 868, 1311
AccB7I CCANNNNNTGG 1 cut(s) 622
AccI GTMKAC 1 cut(s) 828
AciI CCGC 3 cut(s) 797, 854, 1314
AclWI GGATC 2 cut(s) 590, 1331
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 1111, 1141
AcuI CTGAAG 1 cut(s) 1080
AfaI GTAC 3 cut(s) 66, 335, 1227
AfiI CCNNNNNNNGG 5 cut(s) 159, 392, 622, 1255, 1320
AgsI TTSAA 4 cut(s) 16, 84, 1089, 1116
AjiI CACGTC 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 664, 696
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 56, 632, 1092, 1232
AluI AGCT 4 cut(s) 56, 632, 1092, 1232
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 302, 906
AlwI GGATC 2 cut(s) 590, 1331
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 3 cut(s) 456, 757, 1335
ApeKI GCWGC 1 cut(s) 863
ApoI RAATTY 2 cut(s) 1111, 1141
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 407, 1070
AsuII TTCGAA 2 cut(s) 344, 605
AvaI CYCGRG 1 cut(s) 565
BaeI ACNNNNGTAYC 4 cut(s) 418, 451, 553, 586
BalI TGGCCA 1 cut(s) 458
BauI CACGAG 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 850
BccI CCATC 4 cut(s) 161, 276, 394, 1253
BceAI ACGGC 1 cut(s) 520
BciVI GTATCC 1 cut(s) 581
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 302, 906
BfaI CTAG 5 cut(s) 33, 57, 165, 305, 414
BfmI CTRYAG 2 cut(s) 211, 258
BfuAI ACCTGC 2 cut(s) 868, 1311
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 1 cut(s) 864
BlsI GCNGC 1 cut(s) 865
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 679
Bpu14I TTCGAA 2 cut(s) 344, 605
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 322, 654
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 392, 622, 1255, 1320
Bse118I RCCGGY 2 cut(s) 360, 1333
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 322, 654
BseGI GGATG 3 cut(s) 443, 478, 1264
BseLI CCNNNNNNNGG 5 cut(s) 159, 392, 622, 1255, 1320
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 1 cut(s) 850
BsgI GTGCAG 2 cut(s) 389, 849
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 458, 759, 1337
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 3 cut(s) 160, 361, 1334
BslI CCNNNNNNNGG 5 cut(s) 159, 392, 622, 1255, 1320
BsmAI GTCTC 2 cut(s) 302, 906
BsnI GGCC 3 cut(s) 458, 759, 1337
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 2 cut(s) 344, 605
Bsp1286I GDGCHC 1 cut(s) 996
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 109, 595, 958, 1323
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 3 cut(s) 797, 854, 1314
BspANI GGCC 3 cut(s) 458, 759, 1337
BspDI ATCGAT 1 cut(s) 693
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 2 cut(s) 868, 1311
BspPI GGATC 2 cut(s) 590, 1331
BspQI GCTCTTC 1 cut(s) 1099
BspT104I TTCGAA 2 cut(s) 344, 605
BsrFI RCCGGY 2 cut(s) 360, 1333
BsrGI TGTACA 1 cut(s) 333
BssAI RCCGGY 2 cut(s) 360, 1333
BssECI CCNNGG 2 cut(s) 322, 654
BssMI GATC 4 cut(s) 109, 595, 958, 1323
BssNAI GTATAC 1 cut(s) 829
BssSI CACGAG 1 cut(s) 867
BssT1I CCWWGG 2 cut(s) 322, 654
Bst1107I GTATAC 1 cut(s) 829
Bst2BI CACGAG 1 cut(s) 867
Bst4CI ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
Bst6I CTCTTC 1 cut(s) 1099
BstAUI TGTACA 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 622
BstBI TTCGAA 2 cut(s) 344, 605
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 3 cut(s) 443, 478, 1264
BstKTI GATC 4 cut(s) 112, 598, 961, 1326
BstMAI GTCTC 2 cut(s) 302, 906
BstMBI GATC 4 cut(s) 109, 595, 958, 1323
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 235, 244
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 211, 258
BstV1I GCAGC 1 cut(s) 850
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 829
Bsu15I ATCGAT 1 cut(s) 693
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 3 cut(s) 458, 759, 1337
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 654
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 443, 478, 1264
BtsIMutI CAGTG 2 cut(s) 343, 1005
BveI ACCTGC 2 cut(s) 868, 1311
CaiI CAGNNNCTG 1 cut(s) 719
Cfr10I RCCGGY 2 cut(s) 360, 1333
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 3 cut(s) 65, 334, 1226
CviAII CATG 6 cut(s) 244, 446, 460, 655, 769, 1016
CviQI GTAC 3 cut(s) 65, 334, 1226
DpnI GATC 4 cut(s) 111, 597, 960, 1325
DpnII GATC 4 cut(s) 109, 595, 958, 1323
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 1099
EarI CTCTTC 1 cut(s) 1099
Eco130I CCWWGG 2 cut(s) 322, 654
Eco57I CTGAAG 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 322, 654
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 322, 654
FaeI CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
FatI CATG 6 cut(s) 243, 445, 459, 654, 768, 1015
FauI CCCGC 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 864
FokI GGATG 3 cut(s) 450, 485, 1271
Fsp4HI GCNGC 1 cut(s) 864
FspBI CTAG 5 cut(s) 33, 57, 165, 305, 414
GluI GCNGC 1 cut(s) 864
HaeIII GGCC 3 cut(s) 458, 759, 1337
HapII CCGG 3 cut(s) 160, 361, 1334
Hin1II CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
HincII GTYRAC 3 cut(s) 511, 936, 1106
HindII GTYRAC 3 cut(s) 511, 936, 1106
HinfI GANTC 8 cut(s) 80, 149, 354, 607, 875, 899, 1133, 1176
HpaI GTTAAC 1 cut(s) 936
HpaII CCGG 3 cut(s) 160, 361, 1334
HphI GGTGA 2 cut(s) 407, 1070
Hpy166II GTNNAC 6 cut(s) 28, 398, 511, 829, 936, 1106
Hpy188I TCNGA 6 cut(s) 79, 552, 592, 600, 880, 963
Hpy188III TCNNGA 5 cut(s) 107, 113, 134, 294, 611
Hpy8I GTNNAC 6 cut(s) 28, 398, 511, 829, 936, 1106
Hpy99I CGWCG 2 cut(s) 933, 1176
HpyCH4III ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
HpyCH4IV ACGT 3 cut(s) 117, 621, 941
HpyCH4V TGCA 8 cut(s) 4, 183, 203, 260, 319, 370, 699, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 244
HpySE526I ACGT 3 cut(s) 117, 621, 941
Hsp92II CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
KspAI GTTAAC 1 cut(s) 936
Kzo9I GATC 4 cut(s) 109, 595, 958, 1323
LguI GCTCTTC 1 cut(s) 1099
LmnI GCTCC 3 cut(s) 252, 387, 1012
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 1 cut(s) 730
MaeI CTAG 5 cut(s) 33, 57, 165, 305, 414
MaeII ACGT 3 cut(s) 117, 621, 941
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 4 cut(s) 111, 597, 960, 1325
MboI GATC 4 cut(s) 109, 595, 958, 1323
MboII GAAGA 6 cut(s) 298, 363, 605, 684, 1086, 1237
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 996
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 5 cut(s) 730, 792, 1111, 1116, 1141
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 1 cut(s) 1185
MmeI TCCRAC 2 cut(s) 64, 623
Mox20I TGGCCA 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 458
MseI TTAA 3 cut(s) 935, 984, 1342
MslI CAYNNNNRTG 2 cut(s) 276, 473
Msp20I TGGCCA 1 cut(s) 458
MspI CCGG 3 cut(s) 160, 361, 1334
MspR9I CCNGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 235, 244
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 109, 595, 958, 1323
NlaIII CATG 6 cut(s) 247, 449, 463, 658, 772, 1019
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 2 cut(s) 344, 605
OliI CACNNNNGTG 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 1099
PfeI GAWTC 7 cut(s) 80, 149, 354, 607, 875, 899, 1133
PflMI CCANNNNNTGG 1 cut(s) 622
PkrI GCNGC 1 cut(s) 865
PleI GAGTC 1 cut(s) 1184
PpsI GAGTC 1 cut(s) 1184
Ppu21I YACGTR 1 cut(s) 622
PsiI TTATAA 2 cut(s) 500, 810
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 66, 335, 1227
RsaNI GTAC 3 cut(s) 65, 334, 1226
RseI CAYNNNNRTG 2 cut(s) 276, 473
SapI GCTCTTC 1 cut(s) 1099
SaqAI TTAA 3 cut(s) 935, 984, 1342
SatI GCNGC 1 cut(s) 864
Sau3AI GATC 4 cut(s) 109, 595, 958, 1323
SchI GAGTC 1 cut(s) 1185
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 2 cut(s) 211, 258
SfuI TTCGAA 2 cut(s) 344, 605
SmiMI CAYNNNNRTG 2 cut(s) 276, 473
Sse9I AATT 5 cut(s) 730, 792, 1111, 1116, 1141
SsiI CCGC 3 cut(s) 797, 854, 1314
SspI AATATT 2 cut(s) 531, 1154
SspMI CTAG 5 cut(s) 33, 57, 165, 305, 414
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 2 cut(s) 322, 654
TaaI ACNGT 6 cut(s) 333, 338, 526, 933, 1009, 1064
TaiI ACGT 3 cut(s) 120, 624, 944
TaqI TCGA 6 cut(s) 156, 344, 605, 693, 928, 1136
TasI AATT 5 cut(s) 730, 792, 1111, 1116, 1141
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 7 cut(s) 80, 149, 354, 607, 875, 899, 1133
Tru1I TTAA 3 cut(s) 935, 984, 1342
Tru9I TTAA 3 cut(s) 935, 984, 1342
TscAI CASTG 2 cut(s) 343, 1012
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 1 cut(s) 863
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 3 cut(s) 652, 888, 1059
TspGWI ACGGA 3 cut(s) 161, 485, 768
TspRI CASTG 2 cut(s) 343, 1012
Van91I CCANNNNNTGG 1 cut(s) 622
XapI RAATTY 2 cut(s) 1111, 1141
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1256, 1317
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 5 cut(s) 33, 57, 165, 305, 414
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.