Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007168

Physical Location & Seq

Genomic Coordinates Forward (+)

66184908 .. 66187584

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG456500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGTGCTATGGATTCTTCTTCGTCTTGTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTAGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCAAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCATTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGCGAGTTCCAGTTGCCGTGAAAAGTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAAGTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACTGGCAATCACCGAGTCATTGTTAGTGACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATGTAATCTTCTGTCCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C78

Protein Analysis

390

Amino Acids

43.91

Weight (kDa)

6.38

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	119 - 228	2.1e-26	Peptidase family C78
Peptidase_C78	PF07910	310 - 384	9.2e-11	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24680
fragaria_vesca	FvH4_7g32290 FvH4_7g33360 FvH4_7g33361 FvH4_7g33700
malus_domestica	MD01G1231800.v1.1 MD01G1231900.v1.1 MD07G1303900.v1.1
prunus_persica	Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1 Prupe.2G322500_v2.0.a1
pyrus_communis	pycom01g24040 pycom07g27670 pycom07g27680
rosa_chinensis	RchiOBHm_Chr1g0383341
rosa_laevigata	RLG00000026111
rosa_multiflora	Rmu_sc0007173.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277380
rosa_rugosa	Rorug01G0440600
rosa_samantha	Rh1AG466500 Rh1BG423800 Rh1CG437000 Rh1DG456500
rosa_wichuraiana	Rw1G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AclI	AACGTT	1 cut(s)	996
AclWI	GGATC	1 cut(s)	977
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	1 cut(s)	1049
AfiI	CCNNNNNNNGG	1 cut(s)	1083
AgsI	TTSAA	8 cut(s)	71, 101, 290, 604, 723, 933, 1055, 1091
AjnI	CCWGG	3 cut(s)	249, 715, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	2 cut(s)	441, 566
AluI	AGCT	2 cut(s)	441, 566
Alw26I	GTCTC	2 cut(s)	186, 461
AlwI	GGATC	1 cut(s)	977
ApeKI	GCWGC	5 cut(s)	254, 563, 632, 655, 1117
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	3 cut(s)	680, 788, 1141
AsuHPI	GGTGA	2 cut(s)	896, 1007
AvaII	GGWCC	3 cut(s)	680, 788, 1141
AxyI	CCTNAGG	1 cut(s)	684
BbvI	GCAGC	5 cut(s)	241, 575, 619, 642, 1129
BccI	CCATC	9 cut(s)	64, 175, 295, 522, 523, 603, 787, 983, 1055
BceAI	ACGGC	2 cut(s)	89, 834
BciT130I	CCWGG	3 cut(s)	251, 717, 1146
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	186, 461
BfaI	CTAG	3 cut(s)	267, 336, 873
BisI	GCNGC	5 cut(s)	255, 564, 633, 656, 1118
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	5 cut(s)	256, 565, 634, 657, 1119
Bme1390I	CCNGG	3 cut(s)	251, 717, 1146
Bme18I	GGWCC	3 cut(s)	680, 788, 1141
BmgT120I	GGNCC	3 cut(s)	680, 788, 1141
BmiI	GGNNCC	2 cut(s)	153, 1143
BmrFI	CCNGG	3 cut(s)	251, 717, 1146
BmsI	GCATC	2 cut(s)	550, 1104
BoxI	GACNNNNGTC	1 cut(s)	1146
Bpu1102I	GCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	456, 554
BsaJI	CCNNGG	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	1 cut(s)	1083
Bse1I	ACTGG	3 cut(s)	117, 843, 1012
Bse21I	CCTNAGG	1 cut(s)	684
BseBI	CCWGG	3 cut(s)	251, 717, 1146
BseDI	CCNNGG	1 cut(s)	1144
BseGI	GGATG	4 cut(s)	56, 167, 426, 1119
BseLI	CCNNNNNNNGG	1 cut(s)	1083
BseMII	CTCAG	2 cut(s)	302, 384
BseNI	ACTGG	3 cut(s)	117, 843, 1012
BseXI	GCAGC	5 cut(s)	241, 575, 619, 642, 1129
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	1149
BslI	CCNNNNNNNGG	1 cut(s)	1083
BsmAI	GTCTC	2 cut(s)	186, 461
BsmFI	GGGAC	1 cut(s)	1149
BsmI	GAATGC	2 cut(s)	384, 1066
Bsp143I	GATC	4 cut(s)	370, 389, 574, 969
Bsp1720I	GCTNAGC	1 cut(s)	437
BspCNI	CTCAG	2 cut(s)	303, 385
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	153, 1143
BspPI	GGATC	1 cut(s)	977
BsrI	ACTGG	3 cut(s)	117, 843, 1012
BssECI	CCNNGG	1 cut(s)	1144
BssMI	GATC	4 cut(s)	370, 389, 574, 969
Bst2UI	CCWGG	3 cut(s)	251, 717, 1146
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	3 cut(s)	717, 729, 758
BstC8I	GCNNGC	3 cut(s)	78, 568, 660
BstDEI	CTNAG	4 cut(s)	311, 393, 437, 684
BstF5I	GGATG	4 cut(s)	56, 167, 426, 1119
BstKTI	GATC	4 cut(s)	373, 392, 577, 972
BstMAI	GTCTC	2 cut(s)	186, 461
BstMBI	GATC	4 cut(s)	370, 389, 574, 969
BstNI	CCWGG	3 cut(s)	251, 717, 1146
BstNSI	RCATGY	1 cut(s)	80
BstPAI	GACNNNNGTC	1 cut(s)	1146
BstSCI	CCNGG	3 cut(s)	249, 715, 1144
BstV1I	GCAGC	5 cut(s)	241, 575, 619, 642, 1129
BstX2I	RGATCY	1 cut(s)	969
BstYI	RGATCY	1 cut(s)	969
Bsu36I	CCTNAGG	1 cut(s)	684
BtsCI	GGATG	4 cut(s)	56, 167, 426, 1119
Cac8I	GCNNGC	3 cut(s)	78, 568, 660
CciI	TCATGA	1 cut(s)	820
Cfr13I	GGNCC	3 cut(s)	680, 788, 1141
Csp6I	GTAC	1 cut(s)	1048
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	9 cut(s)	77, 172, 215, 229, 281, 821, 961, 1058, 1151
CviQI	GTAC	1 cut(s)	1048
DdeI	CTNAG	4 cut(s)	311, 393, 437, 684
DpnI	GATC	4 cut(s)	372, 391, 576, 971
DpnII	GATC	4 cut(s)	370, 389, 574, 969
Eam1104I	CTCTTC	3 cut(s)	717, 729, 758
EarI	CTCTTC	3 cut(s)	717, 729, 758
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	3 cut(s)	680, 788, 1141
Eco81I	CCTNAGG	1 cut(s)	684
EcoRII	CCWGG	3 cut(s)	249, 715, 1144
EcoRV	GATATC	1 cut(s)	511
FaeI	CATG	9 cut(s)	80, 175, 218, 232, 284, 824, 964, 1061, 1154
FaqI	GGGAC	1 cut(s)	1149
FatI	CATG	9 cut(s)	76, 171, 214, 228, 280, 820, 960, 1057, 1150
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	5 cut(s)	255, 564, 633, 656, 1118
FokI	GGATG	4 cut(s)	43, 154, 413, 1126
Fsp4HI	GCNGC	5 cut(s)	255, 564, 633, 656, 1118
FspBI	CTAG	3 cut(s)	267, 336, 873
GluI	GCNGC	5 cut(s)	255, 564, 633, 656, 1118
GsaI	CCCAGC	1 cut(s)	139
Hin1II	CATG	9 cut(s)	80, 175, 218, 232, 284, 824, 964, 1061, 1154
HinfI	GANTC	7 cut(s)	14, 398, 469, 817, 887, 1020, 1087
HphI	GGTGA	2 cut(s)	896, 1007
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	4 cut(s)	191, 381, 394, 574
Hpy188III	TCNNGA	7 cut(s)	473, 506, 742, 821, 918, 973, 1071
Hpy8I	GTNNAC	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	46, 165, 284
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	4 cut(s)	457, 494, 563, 1117
HpyF3I	CTNAG	4 cut(s)	311, 393, 437, 684
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	9 cut(s)	80, 175, 218, 232, 284, 824, 964, 1061, 1154
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	370, 389, 574, 969
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	5 cut(s)	241, 575, 619, 642, 1129
LweI	GCATC	2 cut(s)	550, 1104
MaeI	CTAG	3 cut(s)	267, 336, 873
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	5 cut(s)	86, 422, 992, 997, 1031
MalI	GATC	4 cut(s)	372, 391, 576, 971
MboI	GATC	4 cut(s)	370, 389, 574, 969
MboII	GAAGA	8 cut(s)	9, 12, 113, 150, 704, 746, 775, 1150
MflI	RGATCY	1 cut(s)	969
MluCI	AATT	7 cut(s)	285, 591, 774, 907, 913, 976, 1134
MlyI	GAGTC	3 cut(s)	463, 826, 1029
MnlI	CCTC	6 cut(s)	70, 88, 226, 388, 730, 759
MseI	TTAA	3 cut(s)	828, 984, 1133
MslI	CAYNNNNRTG	3 cut(s)	431, 756, 882
MspA1I	CMGCKG	1 cut(s)	566
MspR9I	CCNGG	3 cut(s)	251, 717, 1146
Mva1269I	GAATGC	2 cut(s)	384, 1066
MvaI	CCWGG	3 cut(s)	251, 717, 1146
NdeII	GATC	4 cut(s)	370, 389, 574, 969
NlaIII	CATG	9 cut(s)	80, 175, 218, 232, 284, 824, 964, 1061, 1154
NlaIV	GGNNCC	2 cut(s)	153, 1143
NmuCI	GTSAC	2 cut(s)	86, 1031
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	820
PctI	GAATGC	2 cut(s)	384, 1066
PfeI	GAWTC	4 cut(s)	14, 398, 887, 1087
PkrI	GCNGC	5 cut(s)	256, 565, 634, 657, 1119
PleI	GAGTC	3 cut(s)	463, 825, 1028
PpsI	GAGTC	3 cut(s)	463, 825, 1028
PshAI	GACNNNNGTC	1 cut(s)	1146
PsiI	TTATAA	1 cut(s)	912
Psp1406I	AACGTT	1 cut(s)	996
Psp6I	CCWGG	3 cut(s)	249, 715, 1144
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	3 cut(s)	249, 715, 1144
PspN4I	GGNNCC	2 cut(s)	153, 1143
PspPI	GGNCC	3 cut(s)	680, 788, 1141
PsuI	RGATCY	1 cut(s)	969
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	1049
RsaNI	GTAC	1 cut(s)	1048
RseI	CAYNNNNRTG	3 cut(s)	431, 756, 882
SaqAI	TTAA	3 cut(s)	828, 984, 1133
SatI	GCNGC	5 cut(s)	255, 564, 633, 656, 1118
Sau3AI	GATC	4 cut(s)	370, 389, 574, 969
Sau96I	GGNCC	3 cut(s)	680, 788, 1141
SchI	GAGTC	3 cut(s)	463, 826, 1029
ScrFI	CCNGG	3 cut(s)	251, 717, 1146
SfaNI	GCATC	2 cut(s)	550, 1104
SinI	GGWCC	3 cut(s)	680, 788, 1141
SmiMI	CAYNNNNRTG	3 cut(s)	431, 756, 882
SmlI	CTYRAG	2 cut(s)	471, 533
SmoI	CTYRAG	2 cut(s)	471, 533
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	7 cut(s)	285, 591, 774, 907, 913, 976, 1134
SspMI	CTAG	3 cut(s)	267, 336, 873
StyD4I	CCNGG	3 cut(s)	249, 715, 1144
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	4 cut(s)	388, 693, 860, 1070
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	7 cut(s)	285, 591, 774, 907, 913, 976, 1134
TatI	WGTACW	1 cut(s)	1047
TfiI	GAWTC	4 cut(s)	14, 398, 887, 1087
Tru1I	TTAA	3 cut(s)	828, 984, 1133
Tru9I	TTAA	3 cut(s)	828, 984, 1133
TseFI	GTSAC	2 cut(s)	86, 1031
TseI	GCWGC	5 cut(s)	254, 563, 632, 655, 1117
Tsp45I	GTSAC	2 cut(s)	86, 1031
TspDTI	ATGAA	3 cut(s)	188, 203, 297
TspGWI	ACGGA	1 cut(s)	632
VpaK11BI	GGWCC	3 cut(s)	680, 788, 1141
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	3 cut(s)	267, 336, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.