MD01G1231800.v1.1

Zinc finger with UFM1-specific peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007168
Physical Location & Seq
Forward (+)
32051274 .. 32052539
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1231800.v1.1.491

Sequence Viewer

Length: 489 bp
ATGAAAGATCAAGCAATCGGTGAATTGCCATTTTGGAGATGTGATGCAGAAATTAGTATGGGGGAAAAAGTTTCTTGCTTGATTGCTTTACAGACTAGGACTACTTTCCACAAGATTGAAGGTGGCTTAATGGCATTTCTTAGAGGCTGTTTGGAGTTAGAACATGGAAATGCAACCACCATTTTGTCTGGTTATATTGATCAATTTCAGAGCATTCAATCCGAGGACAAGGGGTGGTGTTGCGGGTGGCATAACATCCAAATGCTTAGCTCCCACTTGCTTGTGCAAAGGCAAGAAGCTTGGGAGGTTTTGTTTCGTGGTTCAGGTTTTGTTCCTGATATCCCATCACTTCAAAGGTGGCTTGAGATTGCTTGGGGAAAGGGTTTTGATACACTTGGTTCGGATCATTTTGCTGAGAACGTTTATGGCTCGAGAAAATGGATTGGAGCTACTGAATGTGCTGCCCTTTTCCGTTCTTTTGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C78

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

5.49

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C78 PF07910 62 - 160 2.2e-23 Peptidase family C78
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclI AACGTT 1 cut(s) 420
AclWI GGATC 1 cut(s) 411
AgsI TTSAA 3 cut(s) 119, 218, 353
AluBI AGCT 3 cut(s) 270, 299, 449
AluI AGCT 3 cut(s) 270, 299, 449
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 430
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 352
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 462
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 430
BmsI GCATC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 430
BsmI GAATGC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 430
Bsp143I GATC 3 cut(s) 7, 199, 403
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 7, 199, 403
BstDEI CTNAG 3 cut(s) 140, 266, 414
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 3 cut(s) 10, 202, 406
BstMBI GATC 3 cut(s) 7, 199, 403
BstV1I GCAGC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 255
CviAII CATG 1 cut(s) 164
CviJI RGCY 7 cut(s) 126, 147, 270, 299, 361, 429, 449
CviKI_1 RGCY 7 cut(s) 126, 147, 270, 299, 361, 429, 449
DdeI CTNAG 3 cut(s) 140, 266, 414
DpnI GATC 3 cut(s) 9, 201, 405
DpnII GATC 3 cut(s) 7, 199, 403
Eco32I GATATC 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 430
EcoRV GATATC 1 cut(s) 340
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 59, 165, 195, 252, 426
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 462
Hin1II CATG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 297
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 210, 223, 403
Hpy188III TCNNGA 2 cut(s) 335, 432
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 47, 173, 286
HpyF3I CTNAG 3 cut(s) 140, 266, 414
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 7, 199, 403
LmnI GCTCC 2 cut(s) 275, 446
LpnPI CCDG 3 cut(s) 174, 309, 348
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 420
MalI GATC 3 cut(s) 9, 201, 405
MboI GATC 3 cut(s) 7, 199, 403
MluCI AATT 3 cut(s) 23, 51, 203
MnlI CCTC 3 cut(s) 137, 217, 298
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 168, 260
Mva1269I GAATGC 1 cut(s) 213
NdeII GATC 3 cut(s) 7, 199, 403
NlaIII CATG 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 430
PctI GAATGC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 420
RseI CAYNNNNRTG 2 cut(s) 168, 260
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 3 cut(s) 7, 199, 403
SetI ASST 8 cut(s) 124, 272, 301, 309, 328, 359, 423, 451
SfaNI GCATC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 168, 260
SmlI CTYRAG 2 cut(s) 362, 430
SmoI CTYRAG 2 cut(s) 362, 430
Sse9I AATT 3 cut(s) 23, 51, 203
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 96
TaiI ACGT 1 cut(s) 423
TaqI TCGA 1 cut(s) 431
TasI AATT 3 cut(s) 23, 51, 203
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 430
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.