Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

15932505 .. 15935270

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGGAACTTAAGAGCATGGAATTTGTGTAGATTGAACACAATCTCCCATTTCCAGAAACTTCCTTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATTTTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCTTTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATCAAAGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGTCAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAGTTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTAGAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCAAAAAAAGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGTTCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAACGTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCCTTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCGAGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

273

Amino Acids

31.05

Weight (kDa)

6.56

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	194 - 263	8.4e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	428, 718
AclI	AACGTT	1 cut(s)	698
AclWI	GGATC	2 cut(s)	631, 660
AcsI	RAATTY	3 cut(s)	23, 76, 686
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	5 cut(s)	12, 485, 612, 668, 722
AfiI	CCNNNNNNNGG	2 cut(s)	649, 779
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	7 cut(s)	23, 36, 91, 172, 268, 491, 524
AhlI	ACTAGT	1 cut(s)	254
AloI	GAACNNNNNNTCC	2 cut(s)	83, 115
AluBI	AGCT	6 cut(s)	134, 301, 323, 385, 400, 674
AluI	AGCT	6 cut(s)	134, 301, 323, 385, 400, 674
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	631, 660
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	713, 764
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	3 cut(s)	23, 76, 686
Asp700I	GAANNNNTTC	1 cut(s)	338
AsuC2I	CCSGG	2 cut(s)	714, 715
AsuHPI	GGTGA	3 cut(s)	430, 673, 753
AvaI	CYCGRG	2 cut(s)	713, 764
BaeI	ACNNNNGTAYC	2 cut(s)	433, 466
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	626, 630, 737, 787
BciVI	GTATCC	1 cut(s)	461
BcnI	CCSGG	2 cut(s)	714, 715
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	227, 255, 465
BfrI	CTTAAG	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	714, 715
BmeT110I	CYCGRG	2 cut(s)	713, 764
BmiI	GGNNCC	2 cut(s)	341, 641
BmrFI	CCNGG	2 cut(s)	714, 715
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	714, 715
BsaJI	CCNNGG	2 cut(s)	445, 713
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 779
Bse1I	ACTGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	445, 713
BseGI	GGATG	3 cut(s)	11, 641, 748
BseLI	CCNNNNNNNGG	2 cut(s)	649, 779
BseMII	CTCAG	4 cut(s)	189, 372, 654, 684
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	2 cut(s)	713, 764
BsiSI	CCGG	1 cut(s)	714
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	2 cut(s)	649, 779
BsmFI	GGGAC	1 cut(s)	696
BsoBI	CYCGRG	2 cut(s)	713, 764
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	293, 623, 652, 756
BspACI	CCGC	2 cut(s)	428, 718
BspCNI	CTCAG	4 cut(s)	190, 373, 655, 683
BspLI	GGNNCC	2 cut(s)	341, 641
BspPI	GGATC	2 cut(s)	631, 660
BspTI	CTTAAG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	445, 713
BssMI	GATC	4 cut(s)	293, 623, 652, 756
BssT1I	CCWWGG	1 cut(s)	445
Bst4CI	ACNGT	3 cut(s)	161, 213, 567
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	5 cut(s)	198, 381, 663, 670, 736
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	11, 641, 748
BstKTI	GATC	4 cut(s)	296, 626, 655, 759
BstMBI	GATC	4 cut(s)	293, 623, 652, 756
BstSCI	CCNGG	2 cut(s)	712, 713
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	2 cut(s)	652, 756
BstYI	RGATCY	2 cut(s)	652, 756
BsuI	GTATCC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	11, 641, 748
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	4 cut(s)	195, 209, 272, 481
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr9I	CCCGGG	1 cut(s)	713
CseI	GACGC	2 cut(s)	338, 524
Csp6I	GTAC	5 cut(s)	11, 484, 611, 667, 721
CviAII	CATG	5 cut(s)	57, 72, 359, 581, 598
CviQI	GTAC	5 cut(s)	11, 484, 611, 667, 721
DdeI	CTNAG	5 cut(s)	198, 381, 663, 670, 736
DpnI	GATC	4 cut(s)	295, 625, 654, 758
DpnII	GATC	4 cut(s)	293, 623, 652, 756
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	2 cut(s)	713, 764
EcoICRI	GAGCTC	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	5 cut(s)	60, 75, 362, 584, 601
FaiI	YATR	6 cut(s)	58, 73, 360, 395, 582, 599
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	5 cut(s)	56, 71, 358, 580, 597
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	3 cut(s)	18, 648, 755
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	227, 255, 465
GluI	GCNGC	1 cut(s)	561
HapII	CCGG	1 cut(s)	714
HgaI	GACGC	2 cut(s)	338, 524
Hin1II	CATG	5 cut(s)	60, 75, 362, 584, 601
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	203, 233, 334
HpaII	CCGG	1 cut(s)	714
HphI	GGTGA	3 cut(s)	430, 673, 753
Hpy166II	GTNNAC	2 cut(s)	11, 611
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	6 cut(s)	109, 243, 353, 465, 589, 780
Hpy8I	GTNNAC	2 cut(s)	11, 611
HpyAV	CCTTC	3 cut(s)	509, 716, 779
HpyCH4III	ACNGT	3 cut(s)	161, 213, 567
HpyCH4IV	ACGT	2 cut(s)	646, 698
HpyCH4V	TGCA	2 cut(s)	389, 563
HpyF3I	CTNAG	5 cut(s)	198, 381, 663, 670, 736
HpySE526I	ACGT	2 cut(s)	646, 698
Hsp92II	CATG	5 cut(s)	60, 75, 362, 584, 601
Kzo9I	GATC	4 cut(s)	293, 623, 652, 756
LmnI	GCTCC	2 cut(s)	397, 639
Lsp1109I	GCAGC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	227, 255, 465
MaeII	ACGT	2 cut(s)	646, 698
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	4 cut(s)	295, 625, 654, 758
MboI	GATC	4 cut(s)	293, 623, 652, 756
MboII	GAAGA	3 cut(s)	184, 230, 443
MflI	RGATCY	2 cut(s)	652, 756
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	5 cut(s)	18, 23, 76, 311, 686
MnlI	CCTC	6 cut(s)	193, 258, 353, 550, 568, 643
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	65, 306
MspCI	CTTAAG	1 cut(s)	64
MspI	CCGG	1 cut(s)	714
MspR9I	CCNGG	2 cut(s)	714, 715
NciI	CCSGG	2 cut(s)	714, 715
NdeII	GATC	4 cut(s)	293, 623, 652, 756
NlaIII	CATG	5 cut(s)	60, 75, 362, 584, 601
NlaIV	GGNNCC	2 cut(s)	341, 641
NmuCI	GTSAC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	203, 233, 334
PkrI	GCNGC	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	341, 641
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	652, 756
RsaI	GTAC	5 cut(s)	12, 485, 612, 668, 722
RsaNI	GTAC	5 cut(s)	11, 484, 611, 667, 721
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	65, 306
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	4 cut(s)	293, 623, 652, 756
ScaI	AGTACT	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	714, 715
SduI	GDGCHC	1 cut(s)	402
SmaI	CCCGGG	1 cut(s)	715
SmlI	CTYRAG	2 cut(s)	64, 344
SmoI	CTYRAG	2 cut(s)	64, 344
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	5 cut(s)	18, 23, 76, 311, 686
SsiI	CCGC	2 cut(s)	428, 718
SspMI	CTAG	3 cut(s)	227, 255, 465
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	712, 713
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	161, 213, 567
TaiI	ACGT	2 cut(s)	649, 701
TaqI	TCGA	5 cut(s)	142, 244, 402, 555, 630
TasI	AATT	5 cut(s)	18, 23, 76, 311, 686
TatI	WGTACW	3 cut(s)	483, 610, 666
TfiI	GAWTC	3 cut(s)	203, 233, 334
Tru1I	TTAA	2 cut(s)	65, 306
Tru9I	TTAA	2 cut(s)	65, 306
TscAI	CASTG	4 cut(s)	202, 216, 279, 481
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	5 cut(s)	45, 246, 548, 569, 743
TspMI	CCCGGG	1 cut(s)	713
TspRI	CASTG	4 cut(s)	202, 216, 279, 481
Vha464I	CTTAAG	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	3 cut(s)	23, 76, 686
XbaI	TCTAGA	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	3 cut(s)	227, 255, 465
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.