Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

34591450 .. 34596810

Gene Structure 5361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1289900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAATCTATCAACATGGAGATAGGTACCGTGCGGTGTTGCCTTGACAAACAAGTCCTGTGTTTATCAAGAAAAAGGTTGAGAAAATTGGATTGGAGAAATATCCGCCCACTTCCACATAGTGTAACTACTTGGAAACTAAAGTTGGGTTATCAGAGGCTGATAGGTTCTGAAGTTTCTACTGGGAAGCATCCCTTGAACCATGTCTTCTGGAGAATACATTCAATTCCCACTGGTTCGGAGGAATCATCATCAGTACATGCAGAAATCTATAGCGGAAATGATGAACATGCAACTGAAGATTCGCAGGAGGAGCCTCTTCCTCAACCTTTAAGAAGTAATGAGTTGAAGTCACTGCTAGCTGATTCTGAAAGAACAAAGCTCGTCAAAAAACTAAGTGAGGCCAATCAACAAAATCGGTTCCTCAAACGACAGTTGCATATAAAGGAGGATGCGTTGGTTAACTTCAAAAGTGAACTCGCCGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACACCAAATCTGTTATTCCCGAAGGTTCAAGAAAGATTAATGGGAAGTACATTCAATCCCACCTTCTTTCCCGTTTAGAAGCTGTACATGAAAAGTTGAAGGAACAGATAAAGGACGTTGGTGCTGCACAATCCAAGGAGGTTCCCCTATTCTGGTGTGGCATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGATGGAGTCAAGGAGAGGATTTATCTCCGGAGTACACTGGTTCTTTCACCACATTCTCGACAACATTGATGCTGAGACCTGGAAAGTACGAAATCAAGTTCTTGGTTGATGGGGAATGGAAGCTATCACCAGAATTCCCTACGGTTGGTGAGGGATTAACAACAAATAACTTGTTAATTGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

305

Amino Acids

34.49

Weight (kDa)

6.34

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	226 - 301	1.4e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	3 cut(s)	34, 106, 276
AcsI	RAATTY	2 cut(s)	498, 860
AcuI	CTGAAG	2 cut(s)	192, 318
AdeI	CACNNNGTG	1 cut(s)	122
AfaI	GTAC	6 cut(s)	28, 258, 578, 615, 761, 815
AfiI	CCNNNNNNNGG	2 cut(s)	681, 872
AgsI	TTSAA	8 cut(s)	199, 225, 349, 469, 497, 558, 584, 628
AjnI	CCWGG	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	4 cut(s)	76, 108, 128, 160
AluBI	AGCT	4 cut(s)	362, 382, 611, 850
AluI	AGCT	4 cut(s)	362, 382, 611, 850
Alw26I	GTCTC	1 cut(s)	796
AlwNI	CAGNNNCTG	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	498, 860
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	26
AsuHPI	GGTGA	4 cut(s)	523, 766, 846, 887
AsuNHI	GCTAGC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	3 cut(s)	719, 723, 830
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	796
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	807
BmiI	GGNNCC	4 cut(s)	28, 315, 422, 672
BmrFI	CCNGG	1 cut(s)	807
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	199, 442, 786
BmtI	GCTAGC	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	796
BsaJI	CCNNGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	681, 872
Bse1I	ACTGG	3 cut(s)	187, 238, 769
BseAI	TCCGGA	1 cut(s)	754
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	3 cut(s)	190, 457, 734
BseLI	CCNNNNNNNGG	2 cut(s)	681, 872
BseMII	CTCAG	2 cut(s)	687, 791
BseNI	ACTGG	3 cut(s)	187, 238, 769
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	755
BslI	CCNNNNNNNGG	2 cut(s)	681, 872
BsmAI	GTCTC	1 cut(s)	796
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp13I	TCCGGA	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	613
BspACI	CCGC	3 cut(s)	34, 106, 276
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	688, 792
BspEI	TCCGGA	1 cut(s)	754
BspLI	GGNNCC	4 cut(s)	28, 315, 422, 672
BspOI	GCTAGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	187, 238, 769
BssECI	CCNNGG	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	3 cut(s)	31, 435, 871
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	395, 696, 800
BstF5I	GGATG	3 cut(s)	190, 457, 734
BstMAI	GTCTC	1 cut(s)	796
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	2 cut(s)	263, 293
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	719
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	190, 457, 734
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	231, 353, 762
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	160
Csp6I	GTAC	6 cut(s)	27, 257, 577, 614, 760, 814
CviAII	CATG	6 cut(s)	16, 203, 260, 290, 617, 691
CviJI	RGCY	9 cut(s)	160, 316, 362, 382, 404, 506, 611, 695, 850
CviKI_1	RGCY	9 cut(s)	160, 316, 362, 382, 404, 506, 611, 695, 850
CviQI	GTAC	6 cut(s)	27, 257, 577, 614, 760, 814
DdeI	CTNAG	3 cut(s)	395, 696, 800
DraIII	CACNNNGTG	1 cut(s)	122
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	796
Eco57I	CTGAAG	2 cut(s)	192, 318
EcoRI	GAATTC	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	6 cut(s)	19, 206, 263, 293, 620, 694
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	6 cut(s)	15, 202, 259, 289, 616, 690
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	3 cut(s)	177, 464, 741
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	755
Hin1II	CATG	6 cut(s)	19, 206, 263, 293, 620, 694
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	5 cut(s)	5, 245, 302, 365, 733
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	4 cut(s)	523, 766, 846, 887
Hpy166II	GTNNAC	3 cut(s)	463, 476, 762
Hpy188I	TCNGA	4 cut(s)	156, 172, 241, 370
Hpy188III	TCNNGA	6 cut(s)	69, 211, 548, 558, 755, 784
Hpy8I	GTNNAC	3 cut(s)	463, 476, 762
HpyAV	CCTTC	3 cut(s)	545, 602, 622
HpyCH4III	ACNGT	3 cut(s)	31, 435, 871
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	5 cut(s)	263, 293, 439, 656, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	395, 696, 800
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	6 cut(s)	19, 206, 263, 293, 620, 694
Kpn2I	TCCGGA	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	3 cut(s)	199, 442, 786
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	2 cut(s)	124, 351
MboII	GAAGA	4 cut(s)	199, 311, 311, 536
MhlI	GDGCHC	1 cut(s)	719
MluCI	AATT	6 cut(s)	86, 225, 498, 515, 860, 903
MlyI	GAGTC	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	5 cut(s)	332, 462, 567, 884, 902
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	1 cut(s)	313
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	6 cut(s)	19, 206, 263, 293, 620, 694
NlaIV	GGNNCC	4 cut(s)	28, 315, 422, 672
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	2 cut(s)	263, 293
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	5, 245, 302, 365
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	4 cut(s)	28, 315, 422, 672
PstNI	CAGNNNCTG	1 cut(s)	160
RsaI	GTAC	6 cut(s)	28, 258, 578, 615, 761, 815
RsaNI	GTAC	6 cut(s)	27, 257, 577, 614, 760, 814
SaqAI	TTAA	5 cut(s)	332, 462, 567, 884, 902
SatI	GCNGC	1 cut(s)	654
SchI	GAGTC	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	1 cut(s)	719
SfaNI	GCATC	3 cut(s)	199, 442, 786
SfcI	CTRYAG	1 cut(s)	271
Sse9I	AATT	6 cut(s)	86, 225, 498, 515, 860, 903
SsiI	CCGC	3 cut(s)	34, 106, 276
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	31, 435, 871
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	785
TasI	AATT	6 cut(s)	86, 225, 498, 515, 860, 903
TatI	WGTACW	4 cut(s)	256, 576, 613, 759
TfiI	GAWTC	4 cut(s)	5, 245, 302, 365
Tru1I	TTAA	5 cut(s)	332, 462, 567, 884, 902
Tru9I	TTAA	5 cut(s)	332, 462, 567, 884, 902
TscAI	CASTG	3 cut(s)	238, 360, 769
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	300, 633
TspRI	CASTG	3 cut(s)	238, 360, 769
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	498, 860
XceI	RCATGY	2 cut(s)	263, 293
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.