Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

9112953 .. 9120773

Gene Structure 7821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGATAGGTACTGTGAGGTGTTCCCTTGACAACCAAGTACTGTGGTTGTCAAGAGAAAGTTCAAGAAAATTAGATTGGAGAAATATCCACCCACTTCCACATATTGTAACTACTTGGAAATTAAAGGTGGGATATCAGAGGTTGATAGATTGTCAAGTATCTACTGGGAAGCATTCACTGAACCATGTCTTCTGGAGAAGGCATTCAATTCACACTAGTTTGGAGGAATCATCATCTGTTCAGGGAGAAACTTATAGTGGAAATGATGAATATGCACATAAAGATTCGCAGGAGAATCATCTTTCTCAACCTTTAAGAAGTAATGAGTTGAAGTTACTGCTGGCTGATTCTGAAAGAACAAAGCTTATTAAAAAACTAAGTGAAGCCAATCAACAAAATCGGTTCCTCAAACGGCAGTTGCATATAAAGGAGGATGCGTTGGTTAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACACTAAATCTGTCATTCCACAAGGTTCAAGAAAGATTAATGGGAAATACATTCAGTCTCACCTTCTTTCCCGTTTAGAAGCTGTACATGAAAAGTTGAAGGAACAGATAAAGGATGTTGATGCTGTACAATCCAAGGAGGTTCCCCTATTTTGGTATGGCATGGCTGAGAGTGTGCAAGTTATGGGCACTTTCGATGGTTGGAGTCAAGGAGAACATTTATCATCGGAGTATACTGGTTCTTTCACCGCATTCTCGACAACATTAATGCTCAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAATGGAAGCTGTCACCAGAATTTCCTACAGTTGGTGAAGGATTAATGAAAAATAACTTGTTAATCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

300

Amino Acids

34.37

Weight (kDa)

6.88

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	746
AciI	CCGC	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	483, 845
AfaI	GTAC	4 cut(s)	13, 42, 600, 642
AfiI	CCNNNNNNNGG	2 cut(s)	666, 857
AgsI	TTSAA	7 cut(s)	66, 210, 334, 454, 482, 543, 613
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	3 cut(s)	367, 596, 835
AluI	AGCT	3 cut(s)	367, 596, 835
Alw26I	GTCTC	1 cut(s)	576
ApoI	RAATTY	2 cut(s)	483, 845
AseI	ATTAAT	3 cut(s)	552, 779, 869
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuHPI	GGTGA	5 cut(s)	508, 566, 751, 831, 872
BaeGI	GKGCMC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	184
BccI	CCATC	2 cut(s)	704, 815
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	792
BcoDI	GTCTC	1 cut(s)	576
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	852
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	792
BmiI	GGNNCC	2 cut(s)	407, 657
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	427, 625
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 857
Bse1I	ACTGG	2 cut(s)	172, 754
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	442, 634, 826
BseLI	CCNNNNNNNGG	2 cut(s)	666, 857
BseMII	CTCAG	2 cut(s)	672, 799
BseNI	ACTGG	2 cut(s)	172, 754
BseSI	GKGCMC	1 cut(s)	704
BslI	CCNNNNNNNGG	2 cut(s)	666, 857
BsmAI	GTCTC	1 cut(s)	576
BsmI	GAATGC	3 cut(s)	175, 205, 764
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp1407I	TGTACA	2 cut(s)	598, 640
BspACI	CCGC	1 cut(s)	762
BspCNI	CTCAG	2 cut(s)	673, 798
BspLI	GGNNCC	2 cut(s)	407, 657
BsrGI	TGTACA	2 cut(s)	598, 640
BsrI	ACTGG	2 cut(s)	172, 754
BssECI	CCNNGG	1 cut(s)	648
BssNAI	GTATAC	1 cut(s)	747
BssT1I	CCWWGG	1 cut(s)	648
Bst1107I	GTATAC	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	16, 45, 856
BstAUI	TGTACA	2 cut(s)	598, 640
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	380, 681, 785
BstF5I	GGATG	3 cut(s)	442, 634, 826
BstMAI	GTCTC	1 cut(s)	576
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	747
BtsCI	GGATG	3 cut(s)	442, 634, 826
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	345
Csp6I	GTAC	4 cut(s)	12, 41, 599, 641
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	3 cut(s)	188, 602, 676
CviJI	RGCY	7 cut(s)	347, 367, 389, 491, 596, 680, 835
CviKI_1	RGCY	7 cut(s)	347, 367, 389, 491, 596, 680, 835
CviQI	GTAC	4 cut(s)	12, 41, 599, 641
DdeI	CTNAG	3 cut(s)	380, 681, 785
Eco130I	CCWWGG	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	790
EcoRV	GATATC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	3 cut(s)	191, 605, 679
FatI	CATG	3 cut(s)	187, 601, 675
FblI	GTMKAC	1 cut(s)	746
FokI	GGATG	3 cut(s)	449, 641, 833
FspBI	CTAG	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	217
Hin1II	CATG	3 cut(s)	191, 605, 679
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	5 cut(s)	230, 287, 298, 350, 718
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	5 cut(s)	508, 566, 751, 831, 872
Hpy166II	GTNNAC	3 cut(s)	448, 461, 747
Hpy188I	TCNGA	4 cut(s)	141, 355, 742, 788
Hpy188III	TCNNGA	5 cut(s)	54, 66, 196, 543, 769
Hpy8I	GTNNAC	3 cut(s)	448, 461, 747
HpyAV	CCTTC	5 cut(s)	195, 587, 607, 789, 857
HpyCH4III	ACNGT	3 cut(s)	16, 45, 856
HpyCH4V	TGCA	3 cut(s)	278, 424, 691
HpyF3I	CTNAG	3 cut(s)	380, 681, 785
Hsp92II	CATG	3 cut(s)	191, 605, 679
KspAI	GTTAAC	1 cut(s)	448
LweI	GCATC	2 cut(s)	427, 625
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	109, 336, 837
MboII	GAAGA	2 cut(s)	184, 521
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	6 cut(s)	71, 122, 210, 483, 500, 845
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	6 cut(s)	12, 135, 220, 419, 427, 646
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	8 cut(s)	125, 317, 372, 447, 552, 779, 869, 887
MspR9I	CCNGG	1 cut(s)	792
Mva1269I	GAATGC	3 cut(s)	175, 205, 764
MvaI	CCWGG	1 cut(s)	792
NlaIII	CATG	3 cut(s)	191, 605, 679
NlaIV	GGNNCC	2 cut(s)	407, 657
NmuCI	GTSAC	1 cut(s)	837
PctI	GAATGC	3 cut(s)	175, 205, 764
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	4 cut(s)	230, 287, 298, 350
PleI	GAGTC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	726
PshBI	ATTAAT	3 cut(s)	552, 779, 869
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	407, 657
RsaI	GTAC	4 cut(s)	13, 42, 600, 642
RsaNI	GTAC	4 cut(s)	12, 41, 599, 641
SaqAI	TTAA	8 cut(s)	125, 317, 372, 447, 552, 779, 869, 887
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	2 cut(s)	427, 625
SfcI	CTRYAG	1 cut(s)	852
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	6 cut(s)	71, 122, 210, 483, 500, 845
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	16, 45, 856
TaqI	TCGA	2 cut(s)	708, 770
TasI	AATT	6 cut(s)	71, 122, 210, 483, 500, 845
TatI	WGTACW	3 cut(s)	40, 598, 640
TfiI	GAWTC	4 cut(s)	230, 287, 298, 350
Tru1I	TTAA	8 cut(s)	125, 317, 372, 447, 552, 779, 869, 887
Tru9I	TTAA	8 cut(s)	125, 317, 372, 447, 552, 779, 869, 887
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	837
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	4 cut(s)	285, 618, 816, 887
TspRI	CASTG	1 cut(s)	186
VspI	ATTAAT	3 cut(s)	552, 779, 869
XapI	RAATTY	2 cut(s)	483, 845
XmiI	GTMKAC	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.