Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

59855709 .. 59862130

Gene Structure 6422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAACTGCCCTGCTGCTTGAGAGTTGGGATTATCTCTCAGAGTTCTAATCTATCAAACATGGACACAGGCAGTACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCCACCTCCATATACTATGGATACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTGTTCACCGGGGAGCATTCCCTGAATCATGTCTGGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCATCATCAGAACCACCAGAAGCTTATGGTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAGCAATGAGTTGAAGTCCCTACTGGCTGATTCTGAAAGAACAAAGCTCATTACAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATAGAAAGGAGGATGAGTTGGTGAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGAAGGAACAAATTAAGGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGTATGGCTGAGAGTGTGCAAGTGATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTATCCGCGGAGTATGCAGGTTCTTTTACCACATTCTCAACAACATTAATGCTGAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAATGGAAGCTTTCACCAGAATTTCCTACAGTCGGTGAGGGATTAATGAGAAATAACATGTTAGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

318

Amino Acids

36.11

Weight (kDa)

6.22

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	237 - 313	2e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	794
AccII	CGCG	1 cut(s)	794
AciI	CCGC	2 cut(s)	792, 794
AcsI	RAATTY	4 cut(s)	121, 211, 537, 899
AfaI	GTAC	2 cut(s)	76, 654
AfiI	CCNNNNNNNGG	2 cut(s)	720, 911
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	8 cut(s)	126, 270, 388, 508, 536, 597, 623, 667
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 173, 205
AluBI	AGCT	5 cut(s)	314, 355, 421, 650, 889
AluI	AGCT	5 cut(s)	314, 355, 421, 650, 889
Alw26I	GTCTC	1 cut(s)	835
ApeKI	GCWGC	2 cut(s)	15, 692
ApoI	RAATTY	4 cut(s)	121, 211, 537, 899
AseI	ATTAAT	3 cut(s)	606, 833, 923
Asp700I	GAANNNNTTC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	5 cut(s)	217, 511, 562, 885, 926
BaeGI	GKGCMC	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	2, 679
BccI	CCATC	3 cut(s)	745, 758, 869
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	835
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	906
BfuAI	ACCTGC	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	16, 693
BlsI	GCNGC	2 cut(s)	17, 694
Bme1390I	CCNGG	2 cut(s)	229, 846
BmrFI	CCNGG	2 cut(s)	229, 846
BmsI	GCATC	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	40, 201
BpuMI	CCSGG	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	2 cut(s)	228, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	720, 911
Bse1I	ACTGG	2 cut(s)	402, 587
Bse3DI	GCAATG	2 cut(s)	331, 385
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	228, 792
BseGI	GGATG	4 cut(s)	147, 496, 688, 880
BseLI	CCNNNNNNNGG	2 cut(s)	720, 911
BseMI	GCAATG	2 cut(s)	331, 385
BseMII	CTCAG	3 cut(s)	53, 726, 830
BseNI	ACTGG	2 cut(s)	402, 587
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	2, 679
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	720, 911
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	835
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	652
BspACI	CCGC	2 cut(s)	792, 794
BspCNI	CTCAG	3 cut(s)	52, 727, 831
BspFNI	CGCG	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	835
BsrDI	GCAATG	2 cut(s)	331, 385
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	402, 587
BssECI	CCNNGG	2 cut(s)	228, 792
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	474, 910
BstAUI	TGTACA	1 cut(s)	652
BstDEI	CTNAG	4 cut(s)	39, 434, 735, 839
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	4 cut(s)	147, 496, 688, 880
BstFNI	CGCG	1 cut(s)	794
BstMAI	GTCTC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	2 cut(s)	227, 844
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	2 cut(s)	2, 679
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	4 cut(s)	147, 496, 688, 880
BveI	ACCTGC	1 cut(s)	794
Cfr42I	CCGCGG	1 cut(s)	795
Csp6I	GTAC	2 cut(s)	75, 653
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	4 cut(s)	61, 248, 656, 937
CviQI	GTAC	2 cut(s)	75, 653
DdeI	CTNAG	4 cut(s)	39, 434, 735, 839
Eco31I	GGTCTC	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	844
FaeI	CATG	4 cut(s)	64, 251, 659, 940
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	60, 247, 655, 936
Fnu4HI	GCNGC	2 cut(s)	16, 693
FokI	GGATG	4 cut(s)	134, 503, 695, 887
Fsp4HI	GCNGC	2 cut(s)	16, 693
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	2 cut(s)	16, 693
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	4 cut(s)	64, 251, 659, 940
HindIII	AAGCTT	2 cut(s)	312, 887
HinfI	GANTC	6 cut(s)	244, 290, 341, 404, 459, 772
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	5 cut(s)	217, 511, 562, 885, 926
Hpy166II	GTNNAC	3 cut(s)	225, 502, 515
Hpy188I	TCNGA	4 cut(s)	42, 201, 301, 409
Hpy188III	TCNNGA	2 cut(s)	126, 597
Hpy8I	GTNNAC	3 cut(s)	225, 502, 515
HpyAV	CCTTC	2 cut(s)	661, 843
HpyCH4III	ACNGT	2 cut(s)	474, 910
HpyCH4V	TGCA	4 cut(s)	478, 695, 745, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	4 cut(s)	39, 434, 735, 839
Hsp92II	CATG	4 cut(s)	64, 251, 659, 940
KspI	CCGCGG	1 cut(s)	795
LmnI	GCTCC	2 cut(s)	232, 352
Lsp1109I	GCAGC	2 cut(s)	2, 679
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	279
MboII	GAAGA	3 cut(s)	273, 575, 623
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	9 cut(s)	121, 131, 182, 211, 270, 537, 554, 675, 899
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	1 cut(s)	749
MnlI	CCTC	8 cut(s)	72, 168, 195, 280, 473, 481, 700, 910
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	7 cut(s)	185, 336, 371, 606, 678, 833, 923
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	229, 846
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	800
NciI	CCSGG	1 cut(s)	229
NlaIII	CATG	4 cut(s)	64, 251, 659, 940
NspI	RCATGY	1 cut(s)	940
PciI	ACATGT	1 cut(s)	936
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	5 cut(s)	244, 290, 341, 404, 459
PkrI	GCNGC	2 cut(s)	17, 694
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PscI	ACATGT	1 cut(s)	936
PshBI	ATTAAT	3 cut(s)	606, 833, 923
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
RsaI	GTAC	2 cut(s)	76, 654
RsaNI	GTAC	2 cut(s)	75, 653
SacII	CCGCGG	1 cut(s)	795
SaqAI	TTAA	7 cut(s)	185, 336, 371, 606, 678, 833, 923
SatI	GCNGC	2 cut(s)	16, 693
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	229, 846
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	1 cut(s)	906
Sfr303I	CCGCGG	1 cut(s)	795
SgrBI	CCGCGG	1 cut(s)	795
SmlI	CTYRAG	2 cut(s)	19, 216
SmoI	CTYRAG	2 cut(s)	19, 216
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	9 cut(s)	121, 131, 182, 211, 270, 537, 554, 675, 899
SsiI	CCGC	2 cut(s)	792, 794
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	227, 844
TaaI	ACNGT	2 cut(s)	474, 910
TaqI	TCGA	1 cut(s)	113
TasI	AATT	9 cut(s)	121, 131, 182, 211, 270, 537, 554, 675, 899
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	5 cut(s)	244, 290, 341, 404, 459
Tru1I	TTAA	7 cut(s)	185, 336, 371, 606, 678, 833, 923
Tru9I	TTAA	7 cut(s)	185, 336, 371, 606, 678, 833, 923
TseI	GCWGC	2 cut(s)	15, 692
TspDTI	ATGAA	2 cut(s)	345, 870
VspI	ATTAAT	3 cut(s)	606, 833, 923
XapI	RAATTY	4 cut(s)	121, 211, 537, 899
XceI	RCATGY	1 cut(s)	940
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.