Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

3109915 .. 3116483

Gene Structure 6569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02800.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACATCAGTAGTACGAGCTGTTGCCTTGAGAAACAAGTGCTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAATTATGCACTCACCTCCGTATACTGTGACTGCTTGGAATTTAAAGTTGGGTTATCAGAGGTTGATAAAATCTCAAGTGTTCACCGGGAGGCATTCCCTTAATCATGTCTTGTGGAGAAGATATTCAATTCCCATTAGTATGGAGCAGTCGTCATCAGTACCAGCAGAAGCTTATGGTAGCAATGATGATGTTAAAGATTCAGGGCAGGAGGTTCTTGCTCAATCTTTAACAAGTAATGAGTTGAAGTCCTTACTTGCTGATTCTGAAAGAACGAAGCTCCTTAGAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATGTACAGGAGGATGCGTTGGTTAAATTCAAAAGTGAACTTGCTGTCATTGAACTTGAAATTCAGGCTTTGGTGGCATTGGCAGAAGAAAATGCTAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATCCCATCTCATCTGCTTTCCCGTTTAGCAGCTGTTCATGAGAAGTTAAAGGAACAAATTAAGGATGTTGATGCTGCACAATCAAAGGAGGTTTCCGTATTTTGGTGTGGTATGGCTGAGAATGTGCAAGTTATGGGCTCTTTTGATGGTTGGAGTCAAGGAGAGAATTTATCCCCGCATTATACGGGTTCTTTTACAACGTTCTCAACAACATTAGTGTTGAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAATGGAAGCTTTCACCTGAGTTTCCTACAGTCGGTGAGGGATTAATGAGAAATAACTTGTTAGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

298

Amino Acids

33.51

Weight (kDa)

8.31

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	104
AciI	CCGC	1 cut(s)	734
AclI	AACGTT	1 cut(s)	758
AcsI	RAATTY	5 cut(s)	61, 121, 443, 477, 724
AfaI	GTAC	3 cut(s)	16, 243, 423
AfiI	CCNNNNNNNGG	2 cut(s)	660, 851
AgsI	TTSAA	7 cut(s)	66, 210, 328, 448, 470, 476, 537
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	5 cut(s)	21, 254, 361, 590, 829
AluI	AGCT	5 cut(s)	21, 254, 361, 590, 829
Alw26I	GTCTC	1 cut(s)	775
ApeKI	GCWGC	2 cut(s)	587, 632
ApoI	RAATTY	5 cut(s)	61, 121, 443, 477, 724
AseI	ATTAAT	2 cut(s)	546, 863
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	87, 157, 825, 866
BanII	GRGCYC	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	599, 619
BccI	CCATC	3 cut(s)	571, 698, 809
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	775
BfmI	CTRYAG	1 cut(s)	846
BisI	GCNGC	2 cut(s)	588, 633
BlsI	GCNGC	2 cut(s)	589, 634
Bme1390I	CCNGG	2 cut(s)	169, 786
BmrFI	CCNGG	2 cut(s)	169, 786
BmsI	GCATC	2 cut(s)	421, 619
BpuEI	CTTGAG	2 cut(s)	50, 141
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	660, 851
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	786
BseGI	GGATG	4 cut(s)	436, 558, 628, 820
BseLI	CCNNNNNNNGG	2 cut(s)	660, 851
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	666, 828
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	599, 619
BsgI	GTGCAG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	660, 851
BsmAI	GTCTC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	421
BspACI	CCGC	1 cut(s)	734
BspCNI	CTCAG	2 cut(s)	667, 829
BspHI	TCATGA	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	527
BssNAI	GTATAC	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	109, 414, 850
BstAUI	TGTACA	1 cut(s)	421
BstDEI	CTNAG	4 cut(s)	365, 374, 675, 837
BstF5I	GGATG	4 cut(s)	436, 558, 628, 820
BstMAI	GTCTC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	167, 784
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	599, 619
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstZ17I	GTATAC	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	436, 558, 628, 820
CciI	TCATGA	1 cut(s)	595
Csp6I	GTAC	3 cut(s)	15, 242, 422
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	3 cut(s)	188, 419, 596
CviJI	RGCY	9 cut(s)	21, 254, 361, 383, 485, 590, 674, 696, 829
CviKI_1	RGCY	9 cut(s)	21, 254, 361, 383, 485, 590, 674, 696, 829
CviQI	GTAC	3 cut(s)	15, 242, 422
DdeI	CTNAG	4 cut(s)	365, 374, 675, 837
DraI	TTTAAA	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	698
FaeI	CATG	3 cut(s)	191, 422, 599
FatI	CATG	3 cut(s)	187, 418, 595
FauI	CCCGC	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	588, 633
FokI	GGATG	4 cut(s)	443, 545, 635, 827
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	588, 633
GluI	GCNGC	2 cut(s)	588, 633
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	191, 422, 599
HindIII	AAGCTT	2 cut(s)	252, 827
HinfI	GANTC	4 cut(s)	281, 344, 399, 712
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	4 cut(s)	87, 157, 825, 866
Hpy166II	GTNNAC	3 cut(s)	105, 165, 455
Hpy188I	TCNGA	2 cut(s)	141, 349
Hpy188III	TCNNGA	3 cut(s)	66, 537, 596
Hpy8I	GTNNAC	3 cut(s)	105, 165, 455
HpyAV	CCTTC	1 cut(s)	783
HpyCH4III	ACNGT	3 cut(s)	109, 414, 850
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	4 cut(s)	91, 418, 635, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	4 cut(s)	365, 374, 675, 837
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	3 cut(s)	191, 422, 599
LmnI	GCTCC	2 cut(s)	226, 366
Lsp1109I	GCAGC	2 cut(s)	599, 619
LweI	GCATC	2 cut(s)	421, 619
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	213, 515
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	9 cut(s)	61, 71, 84, 121, 210, 443, 477, 615, 724
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	108, 135, 165, 286, 413, 421, 640, 850
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	9 cut(s)	125, 183, 276, 311, 441, 546, 605, 618, 863
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 786
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	3 cut(s)	191, 422, 599
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	595
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	281, 344, 399
PkrI	GCNGC	2 cut(s)	589, 634
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	2 cut(s)	546, 863
Psp1406I	AACGTT	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	16, 243, 423
RsaNI	GTAC	3 cut(s)	15, 242, 422
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	9 cut(s)	125, 183, 276, 311, 441, 546, 605, 618, 863
SatI	GCNGC	2 cut(s)	588, 633
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	169, 786
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	2 cut(s)	421, 619
SfcI	CTRYAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	29, 156
SmoI	CTYRAG	2 cut(s)	29, 156
Sse9I	AATT	9 cut(s)	61, 71, 84, 121, 210, 443, 477, 615, 724
SsiI	CCGC	1 cut(s)	734
StyD4I	CCNGG	2 cut(s)	167, 784
TaaI	ACNGT	3 cut(s)	109, 414, 850
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	1 cut(s)	53
TasI	AATT	9 cut(s)	61, 71, 84, 121, 210, 443, 477, 615, 724
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	3 cut(s)	281, 344, 399
Tru1I	TTAA	9 cut(s)	125, 183, 276, 311, 441, 546, 605, 618, 863
Tru9I	TTAA	9 cut(s)	125, 183, 276, 311, 441, 546, 605, 618, 863
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	587, 632
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	584, 810
TspGWI	ACGGA	2 cut(s)	90, 643
VspI	ATTAAT	2 cut(s)	546, 863
XapI	RAATTY	5 cut(s)	61, 121, 443, 477, 724
XceI	RCATGY	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.