Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

6123680 .. 6123994

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0036800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCGATTCAGGAGGGGTATACCAGGTACACACCAAATGCAGGGACTTTGGAGCTGCGTCAGGCGATTTGTCATAAGCTGCAAGAGGAGAATGGGATCTCTTACACATCTGATCAGGTTTTGGTTAGTAATGGAGCCAAGCAGTGTATTGATCAAGCAGTTTCGTTCAGGTCCTGCATGTCTGATGAAATTTATGAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

67

Amino Acids

7.92

Weight (kDa)

11.91

Isoelectric Point (pI)

75.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	54, 78
AluI	AGCT	2 cut(s)	54, 78
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	54, 78
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	41, 65
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	2 cut(s)	111, 150
BisI	GCNGC	2 cut(s)	55, 79
BlsI	GCNGC	2 cut(s)	56, 80
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	41, 65
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	95, 111, 150
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	103
BssMI	GATC	3 cut(s)	95, 111, 150
BssNAI	GTATAC	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	98, 114, 153
BstMBI	GATC	3 cut(s)	95, 111, 150
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	41, 65
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	3 cut(s)	54, 78, 136
CviKI_1	RGCY	3 cut(s)	54, 78, 136
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	3 cut(s)	97, 113, 152
DpnII	GATC	3 cut(s)	95, 111, 150
Eco47I	GGWCC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	180
FaiI	YATR	5 cut(s)	20, 74, 178, 194, 202
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	176
FbaI	TGATCA	2 cut(s)	111, 150
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	55, 79
Fsp4HI	GCNGC	2 cut(s)	55, 79
GluI	GCNGC	2 cut(s)	55, 79
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	20, 29
Hpy188I	TCNGA	2 cut(s)	111, 183
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	20, 29
HpyCH4V	TGCA	3 cut(s)	40, 81, 176
Hsp92II	CATG	1 cut(s)	180
Ksp22I	TGATCA	2 cut(s)	111, 150
Kzo9I	GATC	3 cut(s)	95, 111, 150
LmnI	GCTCC	2 cut(s)	51, 133
LpnPI	CCDG	7 cut(s)	9, 26, 36, 46, 100, 153, 186
Lsp1109I	GCAGC	2 cut(s)	41, 65
MabI	ACCWGGT	1 cut(s)	22
MalI	GATC	3 cut(s)	97, 113, 152
MboI	GATC	3 cut(s)	95, 111, 150
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	6, 78
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	95, 111, 150
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	56, 80
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	170
PspPPI	RGGWCCY	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	55, 79
Sau3AI	GATC	3 cut(s)	95, 111, 150
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	5 cut(s)	28, 56, 80, 119, 172
SexAI	ACCWGGT	1 cut(s)	22
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	22
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	54, 78
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.