Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

18132 .. 24667

Gene Structure 6536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggataaaaccaagattaaatatgcttccgtcgctctcatcgtcgaccacgatgccgcccgctcgcactctctcaaagcctgcttcaacctcaccaagcctccaagcgccccagcctctccatctcgatctacactggcagccgcgacgccacttgcggccttaactctgccaagctcctgggccgggttacccgtggtgtaccagaacggctggattgggattggtgggaagaacgggtccgggttggctcagtcgcagttcttcttgagcgtccggacccaacccgaacggagattcgtgagttctaatctatcaaacatggacacaggcagtacgaggtgttgccttgacaaacaagtgttgtggttgtcgagcaaaaattcaagaaaattggattggaaaaacatccacccacctccatatactatggatacttggaaattaaagttgggctttcagaggttgataaattctcaagtgttcaccggggagcattccctgaatcatgtcttgtggagaagatattcaattcccactagtttggaggaatcatcatcagaaccaccagaagcttatggtagcaatgatgaacttaaagattcagggcaggagcttcttgctcaacctttaagaagcaatgagttgaagtccctactggctgattctgaaagaacaaagctcattacaaaactaagtgaagccaatcaacaaaaccgattcctcaaaagacagttgcatataaaggaggatgagttggtgaacttcaaaagtgaacttgctgtcttggaacttgaaattcaggctttggtgaaattggcagaagaaaacgcaaaatctgtcattccagttggttcaagaaagattaatggaaaatatattcaatctcatcttctttcccgtttagaagctgtacatgagaagttgaaggaacaaattaaggatgttgatgctgcacaatcaaaggaggtttccctattttggtgtggtatggctgagagtgtgcaagtgatgggcacttttgatggttggagtcaaggagagcatttatccgcggagtatgcaggttcttttaccacattctcaacaacattaatgcttagacctggaaggtatgaaatcaagttcttggtggatggagaatggaagctttcaccagaatttcctacagtcggtgagggattaatggaaaacaacttgttagtcgtggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

404

Amino Acids

45.08

Weight (kDa)

7.69

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
AccBSI	CCGCTC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	2 cut(s)	146, 1055
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	6 cut(s)	57, 61, 144, 158, 1053, 1055
AcsI	RAATTY	4 cut(s)	382, 472, 798, 1160
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	203, 337, 915
AfiI	CCNNNNNNNGG	3 cut(s)	186, 981, 1172
AgsI	TTSAA	9 cut(s)	88, 387, 531, 649, 769, 797, 858, 884, 928
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	2 cut(s)	179, 1105
AjuI	GAANNNNNNNTTGG	4 cut(s)	382, 414, 434, 466
AluBI	AGCT	6 cut(s)	177, 575, 616, 682, 911, 1150
AluI	AGCT	6 cut(s)	177, 575, 616, 682, 911, 1150
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	2 cut(s)	159, 183
ApeKI	GCWGC	2 cut(s)	140, 953
ApoI	RAATTY	4 cut(s)	382, 472, 798, 1160
AseI	ATTAAT	3 cut(s)	867, 1094, 1184
Asp700I	GAANNNNTTC	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	183, 240, 279
AsuC2I	CCSGG	3 cut(s)	187, 244, 490
AsuHPI	GGTGA	6 cut(s)	85, 478, 772, 823, 1146, 1187
AvaII	GGWCC	2 cut(s)	240, 279
BaeGI	GKGCMC	1 cut(s)	1019
BbvI	GCAGC	2 cut(s)	152, 940
BccI	CCATC	4 cut(s)	130, 1006, 1019, 1130
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	181, 1107
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	3 cut(s)	187, 244, 490
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	1167
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	1055
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	5 cut(s)	57, 141, 144, 159, 954
BlsI	GCNGC	5 cut(s)	58, 142, 145, 160, 955
Bme1390I	CCNGG	5 cut(s)	181, 187, 244, 490, 1107
Bme18I	GGWCC	2 cut(s)	240, 279
BmgT120I	GGNCC	3 cut(s)	183, 240, 279
BmiI	GGNNCC	2 cut(s)	241, 281
BmrFI	CCNGG	5 cut(s)	181, 187, 244, 490, 1107
BmsI	GCATC	2 cut(s)	43, 940
BpuEI	CTTGAG	2 cut(s)	289, 462
BpuMI	CCSGG	3 cut(s)	187, 244, 490
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	180, 195, 489, 1053
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 981, 1172
Bse1I	ACTGG	3 cut(s)	141, 663, 848
Bse3DI	GCAATG	2 cut(s)	592, 646
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	181, 1107
BseDI	CCNNGG	4 cut(s)	180, 195, 489, 1053
BseGI	GGATG	4 cut(s)	408, 757, 949, 1141
BseLI	CCNNNNNNNGG	3 cut(s)	186, 981, 1172
BseMI	GCAATG	2 cut(s)	592, 646
BseMII	CTCAG	2 cut(s)	266, 987
BseNI	ACTGG	3 cut(s)	141, 663, 848
BseSI	GKGCMC	1 cut(s)	1019
BseXI	GCAGC	2 cut(s)	152, 940
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	2 cut(s)	146, 1055
BshFI	GGCC	2 cut(s)	161, 185
BsiSI	CCGG	4 cut(s)	186, 243, 277, 489
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	3 cut(s)	186, 981, 1172
BsmFI	GGGAC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	161, 185
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp13I	TCCGGA	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	1 cut(s)	128
BspACI	CCGC	6 cut(s)	57, 61, 144, 158, 1053, 1055
BspANI	GGCC	2 cut(s)	161, 185
BspCNI	CTCAG	2 cut(s)	265, 988
BspEI	TCCGGA	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	146, 1055
BspLI	GGNNCC	2 cut(s)	241, 281
BspMI	ACCTGC	1 cut(s)	1055
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	592, 646
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	3 cut(s)	141, 663, 848
BssECI	CCNNGG	4 cut(s)	180, 195, 489, 1053
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	181, 1107
Bst4CI	ACNGT	2 cut(s)	735, 1171
BstACI	GRCGYC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	61, 65, 82
BstDEI	CTNAG	4 cut(s)	252, 695, 996, 1100
BstDSI	CCRYGG	2 cut(s)	195, 1053
BstEII	GGTNACC	1 cut(s)	189
BstF5I	GGATG	4 cut(s)	408, 757, 949, 1141
BstFNI	CGCG	2 cut(s)	146, 1055
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 1061
BstNI	CCWGG	2 cut(s)	181, 1107
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	5 cut(s)	179, 185, 242, 488, 1105
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	1 cut(s)	1019
BstUI	CGCG	2 cut(s)	146, 1055
BstV1I	GCAGC	2 cut(s)	152, 940
BstXI	CCANNNNNNTGG	2 cut(s)	180, 544
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	161, 185
BtgI	CCRYGG	2 cut(s)	195, 1053
BtsCI	GGATG	4 cut(s)	408, 757, 949, 1141
BtsIMutI	CAGTG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	3 cut(s)	61, 65, 82
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	183, 240, 279
Cfr42I	CCGCGG	1 cut(s)	1056
CseI	GACGC	2 cut(s)	157, 262
Csp6I	GTAC	3 cut(s)	202, 336, 914
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	3 cut(s)	322, 509, 917
CviQI	GTAC	3 cut(s)	202, 336, 914
DdeI	CTNAG	4 cut(s)	252, 695, 996, 1100
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	240, 279
Eco91I	GGTNACC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	179, 1105
FaeI	CATG	3 cut(s)	325, 512, 920
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	3 cut(s)	321, 508, 916
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	57, 141, 144, 159, 954
FokI	GGATG	4 cut(s)	395, 764, 956, 1148
Fsp4HI	GCNGC	5 cut(s)	57, 141, 144, 159, 954
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	5 cut(s)	57, 141, 144, 159, 954
GsaI	CCCAGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	161, 185
HapII	CCGG	4 cut(s)	186, 243, 277, 489
HgaI	GACGC	2 cut(s)	157, 262
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	325, 512, 920
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	2 cut(s)	573, 1148
HinfI	GANTC	7 cut(s)	297, 505, 551, 602, 665, 720, 1033
HpaII	CCGG	4 cut(s)	186, 243, 277, 489
HphI	GGTGA	6 cut(s)	85, 478, 772, 823, 1146, 1187
Hpy166II	GTNNAC	5 cut(s)	46, 202, 486, 763, 776
Hpy188I	TCNGA	3 cut(s)	462, 562, 670
Hpy188III	TCNNGA	6 cut(s)	126, 268, 277, 301, 387, 858
Hpy8I	GTNNAC	5 cut(s)	46, 202, 486, 763, 776
Hpy99I	CGWCG	3 cut(s)	35, 47, 151
HpyAV	CCTTC	2 cut(s)	922, 1104
HpyCH4III	ACNGT	2 cut(s)	735, 1171
HpyCH4V	TGCA	4 cut(s)	739, 956, 1006, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 1061
HpyF3I	CTNAG	4 cut(s)	252, 695, 996, 1100
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	325, 512, 920
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	276
KspI	CCGCGG	1 cut(s)	1056
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	3 cut(s)	182, 493, 613
Lsp1109I	GCAGC	2 cut(s)	152, 940
LweI	GCATC	2 cut(s)	43, 940
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	130
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	1 cut(s)	128
MboII	GAAGA	5 cut(s)	244, 256, 534, 836, 884
MhlI	GDGCHC	1 cut(s)	1019
MluCI	AATT	9 cut(s)	382, 392, 443, 472, 531, 798, 815, 936, 1160
MlyI	GAGTC	1 cut(s)	1042
MmeI	TCCRAC	1 cut(s)	1010
MroI	TCCGGA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	9 cut(s)	18, 164, 446, 597, 632, 867, 939, 1094, 1184
MspA1I	CMGCKG	1 cut(s)	1055
MspI	CCGG	4 cut(s)	186, 243, 277, 489
MspR9I	CCNGG	5 cut(s)	181, 187, 244, 490, 1107
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	181, 1107
MvnI	CGCG	2 cut(s)	146, 1055
MwoI	GCNNNNNNNGC	2 cut(s)	32, 1061
NciI	CCSGG	3 cut(s)	187, 244, 490
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	325, 512, 920
NlaIV	GGNNCC	2 cut(s)	241, 281
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	6 cut(s)	297, 505, 551, 602, 665, 720
PkrI	GCNGC	5 cut(s)	58, 142, 145, 160, 955
PleI	GAGTC	1 cut(s)	1041
PpsI	GAGTC	1 cut(s)	1041
PshBI	ATTAAT	3 cut(s)	867, 1094, 1184
Psp6I	CCWGG	2 cut(s)	179, 1105
PspEI	GGTNACC	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	179, 1105
PspN4I	GGNNCC	2 cut(s)	241, 281
PspPI	GGNCC	3 cut(s)	183, 240, 279
RsaI	GTAC	3 cut(s)	203, 337, 915
RsaNI	GTAC	3 cut(s)	202, 336, 914
SacII	CCGCGG	1 cut(s)	1056
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	9 cut(s)	18, 164, 446, 597, 632, 867, 939, 1094, 1184
SatI	GCNGC	5 cut(s)	57, 141, 144, 159, 954
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	3 cut(s)	183, 240, 279
SchI	GAGTC	1 cut(s)	1042
ScrFI	CCNGG	5 cut(s)	181, 187, 244, 490, 1107
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	2 cut(s)	43, 940
SfcI	CTRYAG	1 cut(s)	1167
Sfr303I	CCGCGG	1 cut(s)	1056
SgrBI	CCGCGG	1 cut(s)	1056
SinI	GGWCC	2 cut(s)	240, 279
SmlI	CTYRAG	2 cut(s)	268, 477
SmoI	CTYRAG	2 cut(s)	268, 477
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	9 cut(s)	382, 392, 443, 472, 531, 798, 815, 936, 1160
SsiI	CCGC	6 cut(s)	57, 61, 144, 158, 1053, 1055
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	5 cut(s)	179, 185, 242, 488, 1105
TaaI	ACNGT	2 cut(s)	735, 1171
TaqI	TCGA	3 cut(s)	45, 127, 374
TasI	AATT	9 cut(s)	382, 392, 443, 472, 531, 798, 815, 936, 1160
TatI	WGTACW	1 cut(s)	913
TauI	GCSGC	3 cut(s)	59, 146, 161
TfiI	GAWTC	6 cut(s)	297, 505, 551, 602, 665, 720
Tru1I	TTAA	9 cut(s)	18, 164, 446, 597, 632, 867, 939, 1094, 1184
Tru9I	TTAA	9 cut(s)	18, 164, 446, 597, 632, 867, 939, 1094, 1184
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	2 cut(s)	140, 953
TspDTI	ATGAA	2 cut(s)	606, 1131
TspGWI	ACGGA	2 cut(s)	19, 307
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	240, 279
VspI	ATTAAT	3 cut(s)	867, 1094, 1184
XapI	RAATTY	4 cut(s)	382, 472, 798, 1160
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.