Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

10787137 .. 10793888

Gene Structure 6752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACACAGGTAGCACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCTATCTCAATATACTGTGAATACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTTTTCACCGGGAAGCATTCCCTGAATCATGTCTTGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCGTCATCAGAACCAGCAGAAGCTTATGGTAGCAATGATGAACTTAAAGATTCAGGACAGGAGCTTCTTGCTCAACCTTTAAGAAGCAATGAGTTGAAGTCCCTACTGGCTGATTCTGAAAGAACAAAGCTCATTACAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATATAAAGGAGGATGAGTTGGTGAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGGAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGACGGAACAAATTAAGGATGTTGATGCTGCACAATCAAAAGAGGTTTCCCTACTTTGGTGTGGTATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTATCCGCAGAGTATGCAGGTTCTTTTACCACGTTCTCAACAACATTAATGCTGAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAGTGGAAGCTTTCACCAGAATTTCCTACAGTCGGTGAGGGATTAATGAGAAATAACTTGTTAGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

297

Amino Acids

33.74

Weight (kDa)

6.42

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	217 - 286	1.7e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AciI	CCGC	1 cut(s)	732
AcsI	RAATTY	4 cut(s)	61, 151, 477, 839
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	660, 851
AgsI	TTSAA	7 cut(s)	66, 210, 328, 448, 476, 537, 563
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	5 cut(s)	254, 295, 361, 590, 829
AluI	AGCT	5 cut(s)	254, 295, 361, 590, 829
Alw26I	GTCTC	1 cut(s)	775
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	4 cut(s)	61, 151, 477, 839
AseI	ATTAAT	3 cut(s)	546, 773, 863
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
BaeGI	GKGCMC	1 cut(s)	698
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	698, 809
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	169, 786
BmrFI	CCNGG	2 cut(s)	169, 786
BmsI	GCATC	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	660, 851
Bse1I	ACTGG	2 cut(s)	342, 527
Bse3DI	GCAATG	2 cut(s)	271, 325
BseBI	CCWGG	1 cut(s)	786
BseGI	GGATG	4 cut(s)	87, 436, 628, 820
BseLI	CCNNNNNNNGG	2 cut(s)	660, 851
BseMI	GCAATG	2 cut(s)	271, 325
BseMII	CTCAG	2 cut(s)	666, 770
BseNI	ACTGG	2 cut(s)	342, 527
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	660, 851
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	592
BspACI	CCGC	1 cut(s)	732
BspCNI	CTCAG	2 cut(s)	667, 771
BspMI	ACCTGC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	2 cut(s)	271, 325
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	342, 527
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	109, 414, 850
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	374, 675, 779
BstF5I	GGATG	4 cut(s)	87, 436, 628, 820
BstMAI	GTCTC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	786
BstSCI	CCNGG	2 cut(s)	167, 784
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	87, 436, 628, 820
BveI	ACCTGC	1 cut(s)	734
Csp6I	GTAC	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	188, 596
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	3 cut(s)	374, 675, 779
DraIII	CACNNNGTG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	784
FaeI	CATG	2 cut(s)	191, 599
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	187, 595
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	4 cut(s)	74, 443, 635, 827
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	633
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	191, 599
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	252, 827
HinfI	GANTC	6 cut(s)	184, 230, 281, 344, 399, 712
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
Hpy166II	GTNNAC	3 cut(s)	442, 455, 606
Hpy188I	TCNGA	3 cut(s)	141, 241, 349
Hpy188III	TCNNGA	3 cut(s)	66, 285, 537
Hpy8I	GTNNAC	3 cut(s)	442, 455, 606
HpyAV	CCTTC	1 cut(s)	783
HpyCH4III	ACNGT	3 cut(s)	109, 414, 850
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	4 cut(s)	418, 635, 685, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	3 cut(s)	374, 675, 779
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	2 cut(s)	191, 599
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	758
MboII	GAAGA	3 cut(s)	213, 515, 563
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	9 cut(s)	61, 71, 122, 151, 210, 477, 494, 615, 839
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	7 cut(s)	12, 135, 220, 413, 421, 640, 850
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	7 cut(s)	125, 276, 311, 546, 618, 773, 863
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 786
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	1 cut(s)	740
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	2 cut(s)	191, 599
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	3 cut(s)	546, 773, 863
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SaqAI	TTAA	7 cut(s)	125, 276, 311, 546, 618, 773, 863
SatI	GCNGC	1 cut(s)	633
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	169, 786
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	9 cut(s)	61, 71, 122, 151, 210, 477, 494, 615, 839
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	167, 784
TaaI	ACNGT	3 cut(s)	109, 414, 850
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	1 cut(s)	53
TasI	AATT	9 cut(s)	61, 71, 122, 151, 210, 477, 494, 615, 839
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
Tru1I	TTAA	7 cut(s)	125, 276, 311, 546, 618, 773, 863
Tru9I	TTAA	7 cut(s)	125, 276, 311, 546, 618, 773, 863
TseI	GCWGC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	285, 810
TspGWI	ACGGA	1 cut(s)	623
VspI	ATTAAT	3 cut(s)	546, 773, 863
XapI	RAATTY	4 cut(s)	61, 151, 477, 839
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.