Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

8974841 .. 8981694

Gene Structure 6854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACATAGGCAGTACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCTGCCTCAATATACTGTGACTACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTTTTCACCGGGAAGCATTCCCTGAATCATGTCTTGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCGTCATCAGGACCAGCAGAAGCTTATGGTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAGCAATGAGTTGAAGTCCCTACTGGCTGATTCTGAAAGAACAAAGCTCATTACAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATATAAAGGAGGATGAGTTGGTGAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGAAGGAACAAATTAAGGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGTATGGCTGAGGTAAACATACAATCCATACTGTTGTACTTCCTTTGTTCTCATAGTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

243

Amino Acids

27.65

Weight (kDa)

8.78

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	102
AcsI	RAATTY	3 cut(s)	61, 151, 477
AfaI	GTAC	3 cut(s)	16, 594, 704
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	8 cut(s)	66, 210, 328, 448, 476, 537, 563, 607
AhlI	ACTAGT	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	5 cut(s)	254, 295, 361, 590, 728
AluI	AGCT	5 cut(s)	254, 295, 361, 590, 728
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	3 cut(s)	61, 151, 477
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	157, 451, 502
AvaII	GGWCC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	169
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	619
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	2 cut(s)	342, 527
Bse3DI	GCAATG	2 cut(s)	271, 325
BseGI	GGATG	3 cut(s)	87, 436, 628
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	2 cut(s)	271, 325
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	342, 527
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	592
BspCNI	CTCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	271, 325
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	342, 527
Bst4CI	ACNGT	3 cut(s)	109, 414, 699
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	2 cut(s)	374, 675
BstF5I	GGATG	3 cut(s)	87, 436, 628
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	87, 436, 628
BveI	ACCTGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	15, 593, 703
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	188, 596
CviQI	GTAC	3 cut(s)	15, 593, 703
DdeI	CTNAG	2 cut(s)	374, 675
Eco47I	GGWCC	1 cut(s)	242
FaeI	CATG	2 cut(s)	191, 599
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	187, 595
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	3 cut(s)	74, 443, 635
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	633
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	191, 599
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	5 cut(s)	184, 230, 281, 344, 399
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	157, 451, 502
Hpy166II	GTNNAC	3 cut(s)	442, 455, 682
Hpy188I	TCNGA	2 cut(s)	141, 349
Hpy188III	TCNNGA	3 cut(s)	66, 240, 537
Hpy8I	GTNNAC	3 cut(s)	442, 455, 682
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	3 cut(s)	109, 414, 699
HpyCH4V	TGCA	2 cut(s)	418, 635
HpyF3I	CTNAG	2 cut(s)	374, 675
Hsp92II	CATG	2 cut(s)	191, 599
LmnI	GCTCC	2 cut(s)	292, 725
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	213, 515, 563
MluCI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 615
MnlI	CCTC	8 cut(s)	12, 108, 135, 220, 413, 421, 640, 670
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	5 cut(s)	125, 276, 311, 546, 618
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	2 cut(s)	191, 599
NmuCI	GTSAC	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
PkrI	GCNGC	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	16, 594, 704
RsaNI	GTAC	3 cut(s)	15, 593, 703
SaqAI	TTAA	5 cut(s)	125, 276, 311, 546, 618
SatI	GCNGC	1 cut(s)	633
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	619
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 615
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	109, 414, 699
TaqI	TCGA	1 cut(s)	53
TasI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 615
TatI	WGTACW	2 cut(s)	592, 702
TfiI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
Tru1I	TTAA	5 cut(s)	125, 276, 311, 546, 618
Tru9I	TTAA	5 cut(s)	125, 276, 311, 546, 618
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	3 cut(s)	61, 151, 477
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.