Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8185334.1

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 557

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8185334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 395 bp

atggataaaaccaagattaaatatgccgccgtccctctcatcgtcgaccacgacaccgcccgctcgcactctctcaaagcctgcttcaacctcaccaagcctccaagcgccccagcctctccatctcgatctacactggcagccatgacgccacctgcggcctcaactctgccaagctcctgggctgggttacccgtggtgtaccagagcggctggattgggattggtgggaagaacgggtcctggtccgggtccgggttggctcagtcgcagttcttcttgaaagtccgggcccaacccgaccggagattcgtgttcaagttcaacggagagcccgagtgtagcccacaagtttttaaggaagatcgggaagaagagggagagagaggaccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

131

Amino Acids

14.16

Weight (kDa)

9.26

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AccBSI	CCGCTC	2 cut(s)	63, 210
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	5 cut(s)	27, 57, 61, 158, 210
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	186, 249, 255
AgsI	TTSAA	4 cut(s)	88, 283, 319, 325
AjnI	CCWGG	2 cut(s)	179, 242
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	159, 291
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	6 cut(s)	240, 246, 252, 291, 292, 389
AsuC2I	CCSGG	3 cut(s)	250, 256, 290
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	4 cut(s)	240, 246, 252, 389
BaeGI	GKGCMC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	295, 336
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	2 cut(s)	181, 244
BcnI	CCSGG	3 cut(s)	250, 256, 290
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	4 cut(s)	27, 141, 159, 211
BlsI	GCNGC	4 cut(s)	28, 142, 160, 212
Bme1390I	CCNGG	5 cut(s)	181, 244, 250, 256, 290
Bme18I	GGWCC	4 cut(s)	240, 246, 252, 389
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	6 cut(s)	240, 246, 252, 291, 292, 389
BmiI	GGNNCC	3 cut(s)	241, 253, 293
BmrFI	CCNGG	5 cut(s)	181, 244, 250, 256, 290
BpuMI	CCSGG	3 cut(s)	250, 256, 290
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	180, 195
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 249, 255
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	181, 244
BseDI	CCNNGG	2 cut(s)	180, 195
BseLI	CCNNNNNNNGG	3 cut(s)	186, 249, 255
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	2 cut(s)	112, 185
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	161, 293
BsiEI	CGRYCG	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	249, 255, 289, 304
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	186, 249, 255
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	161, 293
BsoBI	CYCGRG	1 cut(s)	335
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	295, 336
Bsp143I	GATC	2 cut(s)	128, 364
BspACI	CCGC	5 cut(s)	27, 57, 61, 158, 210
BspANI	GGCC	2 cut(s)	161, 293
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	241, 253, 293
BspMI	ACCTGC	1 cut(s)	163
BsrBI	CCGCTC	2 cut(s)	63, 210
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	180, 195
BssMI	GATC	2 cut(s)	128, 364
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	181, 244
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	61, 65, 82
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	131, 367
BstMBI	GATC	2 cut(s)	128, 364
BstMCI	CGRYCG	1 cut(s)	304
BstNI	CCWGG	2 cut(s)	181, 244
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	5 cut(s)	179, 242, 248, 254, 288
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	161, 293
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	61, 65, 82
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	6 cut(s)	240, 246, 252, 291, 292, 389
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	130, 366
DpnII	GATC	2 cut(s)	128, 364
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	295, 336
Eco47I	GGWCC	4 cut(s)	240, 246, 252, 389
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	240, 389
EcoO65I	GGTNACC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	179, 242
EcoT38I	GRGCYC	2 cut(s)	295, 336
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	24, 146
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	27, 141, 159, 211
FriOI	GRGCYC	2 cut(s)	295, 336
Fsp4HI	GCNGC	4 cut(s)	27, 141, 159, 211
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	27, 141, 159, 211
GsaI	CCCAGC	2 cut(s)	116, 189
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	161, 293
HapII	CCGG	4 cut(s)	249, 255, 289, 304
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	4 cut(s)	249, 255, 289, 304
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	46, 202
Hpy188III	TCNNGA	3 cut(s)	126, 280, 368
Hpy8I	GTNNAC	2 cut(s)	46, 202
Hpy99I	CGWCG	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	128, 364
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	130, 366
MbiI	CCGCTC	2 cut(s)	63, 210
MboI	GATC	2 cut(s)	128, 364
MboII	GAAGA	5 cut(s)	244, 268, 374, 383, 386
MhlI	GDGCHC	2 cut(s)	295, 336
MnlI	CCTC	7 cut(s)	45, 101, 111, 127, 172, 370, 380
MseI	TTAA	2 cut(s)	18, 357
MspI	CCGG	4 cut(s)	249, 255, 289, 304
MspR9I	CCNGG	5 cut(s)	181, 244, 250, 256, 290
MvaI	CCWGG	2 cut(s)	181, 244
NciI	CCSGG	3 cut(s)	250, 256, 290
NdeII	GATC	2 cut(s)	128, 364
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	3 cut(s)	241, 253, 293
PaqCI	CACCTGC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 333
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	4 cut(s)	28, 142, 160, 212
PpuMI	RGGWCCY	2 cut(s)	240, 389
Psp5II	RGGWCCY	2 cut(s)	240, 389
Psp6I	CCWGG	2 cut(s)	179, 242
PspEI	GGTNACC	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	112, 185
PspGI	CCWGG	2 cut(s)	179, 242
PspN4I	GGNNCC	3 cut(s)	241, 253, 293
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	6 cut(s)	240, 246, 252, 291, 292, 389
PspPPI	RGGWCCY	2 cut(s)	240, 389
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	18, 357
SatI	GCNGC	4 cut(s)	27, 141, 159, 211
Sau3AI	GATC	2 cut(s)	128, 364
Sau96I	GGNCC	6 cut(s)	240, 246, 252, 291, 292, 389
ScrFI	CCNGG	5 cut(s)	181, 244, 250, 256, 290
SduI	GDGCHC	2 cut(s)	295, 336
SetI	ASST	4 cut(s)	93, 157, 179, 394
SinI	GGWCC	4 cut(s)	240, 246, 252, 389
SsiI	CCGC	5 cut(s)	27, 57, 61, 158, 210
StyD4I	CCNGG	5 cut(s)	179, 242, 248, 254, 288
TaqI	TCGA	2 cut(s)	45, 127
TauI	GCSGC	3 cut(s)	29, 161, 213
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	18, 357
Tru9I	TTAA	2 cut(s)	18, 357
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	4 cut(s)	240, 246, 252, 389
XmiI	GTMKAC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.