Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

8547808 .. 8554258

Gene Structure 6451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTAGGCTAGATGCTTCAACCTGTGCATGTTTGACACTCTCCTACGAAGCCGGCCTGGAAGAGAAATTGACGTCCGCCAAGATGGGTAGCGACGTCAAGTCCCTACTCGCTGATTCTGAAAGAACAAAGCTCATTAAAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGGATGCGTTGATTAACTTCAAAAGTGAACTTGCTGTCATGGAACTTGAGCTTCAGGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCATTTCAGTAGGTTCAGGAAAGATTAATGGAAAATACATTCAATCTGATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGAGGGAACAAATTAAAGATGTTGATGCTGCACAATCAAAGGAGGTTTCCTATTTTGGTGTGGTATGGCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

7.71

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	77, 99
AciI	CCGC	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	2 cut(s)	74, 96
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	21, 205, 320
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	133, 235, 347
AluI	AGCT	3 cut(s)	133, 235, 347
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	389
AseI	ATTAAT	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	2 cut(s)	6, 11
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	59
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	4, 178, 376
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	251
BsaHI	GRCGYC	2 cut(s)	74, 96
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	2 cut(s)	74, 96
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	2 cut(s)	74, 96
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	146, 431
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	30, 223, 353
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	146, 431
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	33, 226, 356
FaiI	YATR	4 cut(s)	31, 224, 354, 427
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	29, 222, 352
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	6, 11
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	74, 96
Hin1II	CATG	3 cut(s)	33, 226, 356
HinfI	GANTC	2 cut(s)	116, 171
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	121, 325
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	74, 96
HpyCH4V	TGCA	2 cut(s)	29, 392
HpyF3I	CTNAG	2 cut(s)	146, 431
HpySE526I	ACGT	2 cut(s)	74, 96
Hsp92I	GRCGYC	2 cut(s)	74, 96
Hsp92II	CATG	3 cut(s)	33, 226, 356
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	7 cut(s)	37, 44, 67, 71, 170, 224, 279
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	3 cut(s)	4, 178, 376
MaeI	CTAG	2 cut(s)	6, 11
MaeII	ACGT	2 cut(s)	74, 96
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	74, 272, 320
MluCI	AATT	3 cut(s)	68, 251, 372
MnlI	CCTC	4 cut(s)	185, 357, 397, 426
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	4 cut(s)	138, 198, 303, 375
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	1 cut(s)	325
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	33, 226, 356
NspI	RCATGY	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	116, 171
PkrI	GCNGC	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	138, 198, 303, 375
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	9 cut(s)	26, 77, 99, 135, 237, 292, 349, 408, 437
SfaNI	GCATC	3 cut(s)	4, 178, 376
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	68, 251, 372
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	2 cut(s)	6, 11
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	2 cut(s)	77, 99
TasI	AATT	3 cut(s)	68, 251, 372
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	116, 171
Tru1I	TTAA	4 cut(s)	138, 198, 303, 375
Tru9I	TTAA	4 cut(s)	138, 198, 303, 375
TseI	GCWGC	1 cut(s)	389
VspI	ATTAAT	1 cut(s)	303
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	2 cut(s)	6, 11
ZraI	GACGTC	2 cut(s)	75, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.