Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

10494317 .. 10733557

Gene Structure 239241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACATAGGCAGTACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCTACCTCAATATACTGTGAATACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTTTTCACCGGGAAGCATTCCCTGAATCATGTCTTGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCGTCATCAGAACCAGCAGAAGCTTATGGTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAGTAATGAGTTGCATATAAGGGAGGATGCGTTGATTAACTTCAAAAGTGAACTTGCTGTCATGGAACTTGAACTTCTGGCTTTGGTGAAATTGGCAGAAGAAAATGCAAAATCTGTCATTCCAGTTGGTTCTAGAACGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCCGTACATGAGAAGTTGAAGGAACAAATTAAAGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGTATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTATCTGCGGAGTATGCAGGTTCTTTTAGCACATTCTCAACAACATTAATGCTGAGACCTGGAAGGCGTGCAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

238

Amino Acids

26.85

Weight (kDa)

6.67

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	644
AciI	CCGC	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	61, 151
AfaI	GTAC	2 cut(s)	16, 504
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	6 cut(s)	66, 210, 358, 386, 473, 517
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	2 cut(s)	254, 295
AluI	AGCT	2 cut(s)	254, 295
Alw26I	GTCTC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	542, 707
ApoI	RAATTY	2 cut(s)	61, 151
AseI	ATTAAT	2 cut(s)	456, 683
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	157, 412
BaeGI	GKGCMC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	685
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	219, 447
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	2 cut(s)	543, 708
BlsI	GCNGC	2 cut(s)	544, 709
Bme1390I	CCNGG	2 cut(s)	169, 696
BmrFI	CCNGG	2 cut(s)	169, 696
BmsI	GCATC	2 cut(s)	331, 529
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	685
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	696
BseGI	GGATG	2 cut(s)	87, 346
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	576, 680
BseNI	ACTGG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	685
Bsp1286I	GDGCHC	1 cut(s)	608
BspACI	CCGC	1 cut(s)	644
BspCNI	CTCAG	2 cut(s)	577, 681
BspMI	ACCTGC	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	2 cut(s)	585, 689
BstF5I	GGATG	2 cut(s)	87, 346
BstMAI	GTCTC	1 cut(s)	685
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	2 cut(s)	167, 694
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	87, 346
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	705
Csp6I	GTAC	2 cut(s)	15, 503
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	3 cut(s)	188, 376, 506
CviJI	RGCY	6 cut(s)	135, 254, 295, 395, 500, 584
CviKI_1	RGCY	6 cut(s)	135, 254, 295, 395, 500, 584
CviQI	GTAC	2 cut(s)	15, 503
DdeI	CTNAG	2 cut(s)	585, 689
Eco31I	GGTCTC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	191, 379, 509
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	3 cut(s)	187, 375, 505
Fnu4HI	GCNGC	2 cut(s)	543, 708
FokI	GGATG	2 cut(s)	74, 353
Fsp4HI	GCNGC	2 cut(s)	543, 708
FspBI	CTAG	2 cut(s)	219, 447
GluI	GCNGC	2 cut(s)	543, 708
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	191, 379, 509
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	4 cut(s)	184, 230, 281, 622
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	157, 412
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	141, 241
Hpy188III	TCNNGA	2 cut(s)	66, 447
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	511, 693
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	328, 422, 545, 595, 653, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	2 cut(s)	585, 689
Hsp92II	CATG	3 cut(s)	191, 379, 509
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	331, 529
MaeI	CTAG	2 cut(s)	219, 447
MboII	GAAGA	3 cut(s)	213, 425, 473
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	7 cut(s)	61, 71, 122, 151, 210, 404, 525
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	6 cut(s)	12, 108, 135, 220, 331, 550
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	7 cut(s)	125, 276, 311, 351, 456, 528, 683
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 696
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	650
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	3 cut(s)	191, 379, 509
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	184, 230, 281
PkrI	GCNGC	2 cut(s)	544, 709
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PshBI	ATTAAT	2 cut(s)	456, 683
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	16, 504
RsaNI	GTAC	2 cut(s)	15, 503
SaqAI	TTAA	7 cut(s)	125, 276, 311, 351, 456, 528, 683
SatI	GCNGC	2 cut(s)	543, 708
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	169, 696
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	2 cut(s)	331, 529
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	7 cut(s)	61, 71, 122, 151, 210, 404, 525
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	2 cut(s)	219, 447
StyD4I	CCNGG	2 cut(s)	167, 694
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	53
TasI	AATT	7 cut(s)	61, 71, 122, 151, 210, 404, 525
TfiI	GAWTC	3 cut(s)	184, 230, 281
Tru1I	TTAA	7 cut(s)	125, 276, 311, 351, 456, 528, 683
Tru9I	TTAA	7 cut(s)	125, 276, 311, 351, 456, 528, 683
TscAI	CASTG	1 cut(s)	717
TseI	GCWGC	2 cut(s)	542, 707
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	717
VspI	ATTAAT	2 cut(s)	456, 683
XapI	RAATTY	2 cut(s)	61, 151
XbaI	TCTAGA	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	219, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.