Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

9952759 .. 10227871

Gene Structure 275113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACATAGGCAGTACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCTACCTCAATATACTGTGACTACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTTTTCACCGGGAAGCATTCCCTGAATCATGTCTTGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCGTCATCAGAACCAGCAGAAGCGTATGGTAGCAATGATGAACTTAAAGATTCAGGACAGGAGCTTCTTGCTCAACCTTTAAGAAGCAAGGAGTTGAAGTCCCTACTGGCTGATTCTGAAAGAACAAAGCTCATTACAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATATAAAGGAGGATGAGTTGGTGAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAATGCAAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGAAGGAACAAACTAAGGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGTATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTGTCCGCGGAGTATGCAGGTTCTTTTACCACATTCTCAACAACATTAATGCTGAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAGTGGAAGCTTTCACCAGAATTTCCTACAGTCGGTGAGGGATTAATGAGAAATAACTTGTTAGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

297

Amino Acids

33.81

Weight (kDa)

7.07

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	217 - 286	1.9e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccII	CGCG	1 cut(s)	734
AciI	CCGC	2 cut(s)	732, 734
AcsI	RAATTY	4 cut(s)	61, 151, 477, 839
AfaI	GTAC	2 cut(s)	16, 594
AfiI	CCNNNNNNNGG	2 cut(s)	660, 851
AgsI	TTSAA	8 cut(s)	66, 210, 328, 448, 476, 537, 563, 607
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	4 cut(s)	295, 361, 590, 829
AluI	AGCT	4 cut(s)	295, 361, 590, 829
Alw26I	GTCTC	1 cut(s)	775
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	4 cut(s)	61, 151, 477, 839
AseI	ATTAAT	3 cut(s)	546, 773, 863
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
BaeGI	GKGCMC	1 cut(s)	698
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	698, 809
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	169, 786
BmrFI	CCNGG	2 cut(s)	169, 786
BmsI	GCATC	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 314, 344, 419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	660, 851
Bse1I	ACTGG	2 cut(s)	342, 527
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	4 cut(s)	87, 436, 628, 820
BseLI	CCNNNNNNNGG	2 cut(s)	660, 851
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	666, 770
BseNI	ACTGG	2 cut(s)	342, 527
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	660, 851
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	592
BspACI	CCGC	2 cut(s)	732, 734
BspCNI	CTCAG	2 cut(s)	667, 771
BspFNI	CGCG	1 cut(s)	734
BspMI	ACCTGC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	342, 527
BssECI	CCNNGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	109, 414, 850
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	4 cut(s)	374, 618, 675, 779
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	4 cut(s)	87, 436, 628, 820
BstFNI	CGCG	1 cut(s)	734
BstMAI	GTCTC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	786
BstSCI	CCNGG	2 cut(s)	167, 784
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	732
BtsCI	GGATG	4 cut(s)	87, 436, 628, 820
BveI	ACCTGC	1 cut(s)	734
Cfr42I	CCGCGG	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	15, 593
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	188, 596
CviJI	RGCY	9 cut(s)	135, 295, 341, 361, 383, 485, 590, 674, 829
CviKI_1	RGCY	9 cut(s)	135, 295, 341, 361, 383, 485, 590, 674, 829
CviQI	GTAC	2 cut(s)	15, 593
DdeI	CTNAG	4 cut(s)	374, 618, 675, 779
Eco31I	GGTCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	784
FaeI	CATG	2 cut(s)	191, 599
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	187, 595
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	4 cut(s)	74, 443, 635, 827
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	633
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	191, 599
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	6 cut(s)	184, 230, 281, 344, 399, 712
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
Hpy166II	GTNNAC	2 cut(s)	442, 455
Hpy188I	TCNGA	3 cut(s)	141, 241, 349
Hpy188III	TCNNGA	3 cut(s)	66, 285, 537
Hpy8I	GTNNAC	2 cut(s)	442, 455
HpyAV	CCTTC	2 cut(s)	601, 783
HpyCH4III	ACNGT	3 cut(s)	109, 414, 850
HpyCH4V	TGCA	5 cut(s)	418, 512, 635, 685, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	4 cut(s)	374, 618, 675, 779
Hsp92II	CATG	2 cut(s)	191, 599
KspI	CCGCGG	1 cut(s)	735
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	213, 515, 563
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	12, 108, 135, 220, 413, 421, 640, 850
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 786
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	1 cut(s)	740
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	2 cut(s)	191, 599
NmuCI	GTSAC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	3 cut(s)	546, 773, 863
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
RsaI	GTAC	2 cut(s)	16, 594
RsaNI	GTAC	2 cut(s)	15, 593
SacII	CCGCGG	1 cut(s)	735
SaqAI	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
SatI	GCNGC	1 cut(s)	633
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	169, 786
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	846
Sfr303I	CCGCGG	1 cut(s)	735
SgrBI	CCGCGG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
SsiI	CCGC	2 cut(s)	732, 734
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	167, 784
TaaI	ACNGT	3 cut(s)	109, 414, 850
TaqI	TCGA	1 cut(s)	53
TasI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
Tru1I	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
Tru9I	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	285, 810
VspI	ATTAAT	3 cut(s)	546, 773, 863
XapI	RAATTY	4 cut(s)	61, 151, 477, 839
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.