Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

59047476 .. 59052486

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCTGGTGGAGAAGATATTCAATTCCCACTAGAGTTGGAGGAATCGTCGTCAGTACCGGCAGAAGCTCATGGTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAAGCTAACGCATGTTACACTTGTATATCAGTTGAAGTCCCTACTCGCTGATTCTGAAAGAGCAAAGCTCATTAAAAAACTAATTGAAGCCAATCAACAAAACCGATTCCTGAAAAGACAGTTGCATATAAGGGAGGATGCATTAATTAACTTCAAAAGCGAACTTGCTGTCATGGAACTTTATTCAGCTAGAAGGTGCAGGGAAGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCCTTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGATACTGTTGCATGTGTCTGTCTGTGTGAAGCTGTACATGAGAAGTTGAAGGAACAAATTAAAGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGCATTGACTTACTGAAAATTGATGAGATGGGTCACTTCATTACAAAAGAAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

201

Amino Acids

22.67

Weight (kDa)

6.11

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	57, 474
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	7 cut(s)	23, 163, 215, 283, 387, 413, 487
AluBI	AGCT	7 cut(s)	68, 109, 133, 196, 317, 335, 470
AluI	AGCT	7 cut(s)	68, 109, 133, 196, 317, 335, 470
ApeKI	GCWGC	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AseI	ATTAAT	2 cut(s)	272, 396
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	568
BfaI	CTAG	2 cut(s)	32, 318
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmsI	GCATC	2 cut(s)	256, 499
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	2 cut(s)	346, 498
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	249, 445
BstAUI	TGTACA	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	271
BstNSI	RCATGY	2 cut(s)	143, 453
BstV1I	GCAGC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	56, 473
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	5 cut(s)	71, 140, 301, 450, 476
CviJI	RGCY	8 cut(s)	68, 109, 133, 196, 218, 317, 335, 470
CviKI_1	RGCY	8 cut(s)	68, 109, 133, 196, 218, 317, 335, 470
CviQI	GTAC	2 cut(s)	56, 473
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	5 cut(s)	74, 143, 304, 453, 479
FaiI	YATR	8 cut(s)	72, 141, 154, 255, 257, 302, 451, 477
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	70, 139, 300, 449, 475
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	2 cut(s)	32, 318
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	5 cut(s)	74, 143, 304, 453, 479
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	4 cut(s)	44, 95, 179, 234
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	238, 387
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	315, 383, 481
HpyCH4III	ACNGT	2 cut(s)	249, 445
HpyCH4V	TGCA	5 cut(s)	253, 269, 327, 449, 515
Hsp92II	CATG	5 cut(s)	74, 143, 304, 453, 479
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	72, 84, 89, 251, 313, 390
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	256, 499
MaeI	CTAG	2 cut(s)	32, 318
MaeIII	GTNAC	2 cut(s)	142, 578
MboII	GAAGA	4 cut(s)	26, 365, 413, 449
MluCI	AATT	6 cut(s)	23, 210, 273, 344, 495, 564
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	34, 256, 520
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	7 cut(s)	90, 125, 201, 272, 276, 396, 498
MspI	CCGG	1 cut(s)	59
NlaIII	CATG	5 cut(s)	74, 143, 304, 453, 479
NmuCI	GTSAC	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	2 cut(s)	143, 453
PacI	TTAATTAA	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	44, 95, 179, 234
PkrI	GCNGC	1 cut(s)	514
PshBI	ATTAAT	2 cut(s)	272, 396
RsaI	GTAC	2 cut(s)	57, 474
RsaNI	GTAC	2 cut(s)	56, 473
SaqAI	TTAA	7 cut(s)	90, 125, 201, 272, 276, 396, 498
SatI	GCNGC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	256, 499
Sse9I	AATT	6 cut(s)	23, 210, 273, 344, 495, 564
SspMI	CTAG	2 cut(s)	32, 318
TaaI	ACNGT	2 cut(s)	249, 445
TasI	AATT	6 cut(s)	23, 210, 273, 344, 495, 564
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	4 cut(s)	44, 95, 179, 234
Tru1I	TTAA	7 cut(s)	90, 125, 201, 272, 276, 396, 498
Tru9I	TTAA	7 cut(s)	90, 125, 201, 272, 276, 396, 498
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	2 cut(s)	99, 574
VspI	ATTAAT	2 cut(s)	272, 396
XceI	RCATGY	2 cut(s)	143, 453
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	2 cut(s)	32, 318
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.