Rh6BG520800

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003011
Physical Location & Seq
Forward (+)
71442246 .. 71443841
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG520800.1

Sequence Viewer

Length: 534 bp
ATGACTGAAAGTGTTGAGCTTTTGGTGAGGTTTAAAGGTCTAAATCTTTCTGACCTTGATCTTTCTGGTTTGGACTTATCAGAGGTGGATTTTAGTTATGCATGCATCTCCATCTCGATCAACACCGGCAGCCGCGGTGCCACCTGCGGCCTCAACTCCGCCAAGCTCCTGGGCCGGGTCACCGTGCCACTGGCGGAGCTGGCCACGGCGGAGTCGCGCCCCGTGGTGTACCAGAACGGCTGGATTGGGATTGGTGGGAAGAAAAACGGGTCCGGGTTGGCTCAGTCACAGTTCTTCTTAAGCGTCCGGGGCCAACCCGACCGGAGATTCGTGTTCGAGTTCAACGGAGAGTCCGAGTGTAGCCCACAAGTTTTTCAGGAAGATCGGGAAGAAGAGAGAGAGAGAGAGGATGTTGGTGGTGGTCTGAAGAGAGAGGAGGGGGGGGGGGGGCGAACGAGAGAAGAAAAGACCCAAAAAGAAAATCTGAGGGTGTTTTGGGAAGTATCAAAAAAAGATGACATGAAATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

5.03

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 32 - 126 8.9e-29 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 2 cut(s) 135, 217
AciI CCGC 6 cut(s) 133, 135, 147, 159, 194, 209
AcoI YGGCCR 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 175
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 19, 166, 199
AluI AGCT 3 cut(s) 19, 166, 199
AoxI GGCC 4 cut(s) 148, 172, 201, 310
ApeKI GCWGC 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 172, 270, 310
AsuC2I CCSGG 3 cut(s) 176, 274, 308
AsuHPI GGTGA 2 cut(s) 37, 172
AvaII GGWCC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 222, 253
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 3 cut(s) 176, 274, 308
BfrI CTTAAG 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 130, 133, 148
BlsI GCNGC 3 cut(s) 131, 134, 149
Bme1390I CCNGG 4 cut(s) 170, 176, 274, 308
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 172, 270, 310
BmiI GGNNCC 3 cut(s) 139, 271, 311
BmrFI CCNGG 4 cut(s) 170, 176, 274, 308
BmsI GCATC 1 cut(s) 114
BpuMI CCSGG 3 cut(s) 176, 274, 308
BsaJI CCNNGG 5 cut(s) 133, 169, 204, 222, 307
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 5 cut(s) 133, 169, 204, 222, 307
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 296, 476
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 135, 217
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 4 cut(s) 150, 174, 203, 312
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 322
BsiSI CCGG 5 cut(s) 126, 175, 273, 307, 322
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 4 cut(s) 150, 174, 203, 312
Bsp143I GATC 3 cut(s) 58, 117, 382
BspACI CCGC 6 cut(s) 133, 135, 147, 159, 194, 209
BspANI GGCC 4 cut(s) 150, 174, 203, 312
BspCNI CTCAG 2 cut(s) 295, 477
BspFNI CGCG 2 cut(s) 135, 217
BspLI GGNNCC 3 cut(s) 139, 271, 311
BspMI ACCTGC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 133, 169, 204, 222, 307
BssMI GATC 3 cut(s) 58, 117, 382
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 184, 291
Bst6I CTCTTC 2 cut(s) 387, 422
BstAFI CTTAAG 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 103, 201
BstDEI CTNAG 2 cut(s) 282, 485
BstDSI CCRYGG 3 cut(s) 133, 204, 222
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 2 cut(s) 135, 217
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 61, 120, 385
BstMBI GATC 3 cut(s) 58, 117, 382
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 2 cut(s) 200, 309
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 168, 174, 272, 306
BstUI CGCG 2 cut(s) 135, 217
BstV1I GCAGC 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuRI GGCC 4 cut(s) 150, 174, 203, 312
BtgI CCRYGG 3 cut(s) 133, 204, 222
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 103, 201
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 172, 270, 310
Cfr42I CCGCGG 1 cut(s) 136
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 102, 520
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 282, 485
DpnI GATC 3 cut(s) 60, 119, 384
DpnII GATC 3 cut(s) 58, 117, 382
DraI TTTAAA 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 387, 422
EarI CTCTTC 2 cut(s) 387, 422
EciI GGCGGA 3 cut(s) 148, 209, 224
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 168
EcoT22I ATGCAT 2 cut(s) 103, 107
FaeI CATG 2 cut(s) 105, 523
FaiI YATR 3 cut(s) 99, 103, 521
FatI CATG 2 cut(s) 101, 519
Fnu4HI GCNGC 3 cut(s) 130, 133, 148
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 3 cut(s) 130, 133, 148
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 130, 133, 148
HaeIII GGCC 4 cut(s) 150, 174, 203, 312
HapII CCGG 5 cut(s) 126, 175, 273, 307, 322
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 219
Hin1II CATG 2 cut(s) 105, 523
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 3 cut(s) 212, 327, 350
HpaII CCGG 5 cut(s) 126, 175, 273, 307, 322
HphI GGTGA 2 cut(s) 37, 172
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 5 cut(s) 52, 82, 355, 426, 486
Hpy188III TCNNGA 3 cut(s) 115, 377, 386
Hpy8I GTNNAC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 184, 291
HpyCH4V TGCA 2 cut(s) 101, 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 309
HpyF3I CTNAG 2 cut(s) 282, 485
Hsp92II CATG 2 cut(s) 105, 523
HspAI GCGC 1 cut(s) 217
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 3 cut(s) 58, 117, 382
LmnI GCTCC 2 cut(s) 171, 196
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 178, 285
MalI GATC 3 cut(s) 60, 119, 384
MboI GATC 3 cut(s) 58, 117, 382
MboII GAAGA 7 cut(s) 271, 286, 392, 401, 404, 439, 473
MlsI TGGCCA 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 221, 359
MnlI CCTC 7 cut(s) 21, 76, 161, 400, 427, 430, 480
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 2 cut(s) 103, 107
MscI TGGCCA 1 cut(s) 203
MseI TTAA 3 cut(s) 33, 299, 532
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 5 cut(s) 126, 175, 273, 307, 322
MspR9I CCNGG 4 cut(s) 170, 176, 274, 308
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 135, 217
MwoI GCNNNNNNNGC 2 cut(s) 200, 309
NciI CCSGG 3 cut(s) 176, 274, 308
NdeII GATC 3 cut(s) 58, 117, 382
NlaIII CATG 2 cut(s) 105, 523
NlaIV GGNNCC 3 cut(s) 139, 271, 311
NmuCI GTSAC 2 cut(s) 178, 285
NsiI ATGCAT 2 cut(s) 103, 107
NspI RCATGY 1 cut(s) 105
PaeI GCATGC 1 cut(s) 105
PaqCI CACCTGC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 3 cut(s) 131, 134, 149
PleI GAGTC 2 cut(s) 220, 358
PpsI GAGTC 2 cut(s) 220, 358
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 178
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 3 cut(s) 139, 271, 311
PspPI GGNCC 3 cut(s) 172, 270, 310
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacII CCGCGG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 33, 299, 532
SatI GCNGC 3 cut(s) 130, 133, 148
Sau3AI GATC 3 cut(s) 58, 117, 382
Sau96I GGNCC 3 cut(s) 172, 270, 310
SchI GAGTC 2 cut(s) 221, 359
ScrFI CCNGG 4 cut(s) 170, 176, 274, 308
SetI ASST 8 cut(s) 21, 32, 40, 57, 87, 146, 168, 201
SfaNI GCATC 1 cut(s) 114
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SphI GCATGC 1 cut(s) 105
SsiI CCGC 6 cut(s) 133, 135, 147, 159, 194, 209
SspI AATATT 1 cut(s) 527
StyD4I CCNGG 4 cut(s) 168, 174, 272, 306
TaaI ACNGT 2 cut(s) 184, 291
TaqI TCGA 2 cut(s) 116, 336
TauI GCSGC 2 cut(s) 135, 150
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 3 cut(s) 33, 299, 532
Tru9I TTAA 3 cut(s) 33, 299, 532
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 178, 285
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 2 cut(s) 178, 285
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 270
XceI RCATGY 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 103, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.