Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

10763397 .. 10769429

Gene Structure 6033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACACAGGTAGCACGAGGTGTTGCCTTGACAAACAAGTGTTGTGGTTGTCGAGCAAAAATTCAAGAAAATTGGATTGGAAAAACATCCACCTACCTCAATATACTGTGACTACTTGGAAATTAAAGTTGGGCTTTCAGAGGTTGATAAATTCTCAAGTTTTCACCGGGAAGCATTCCCTGAATCATGTCTTGTGGAGAAGATATTCAATTCCCACTAGTTTGGAGGAATCGTCATCAGAACCAGCAGAAGCGTATGGTAGCAATGATGAACTTAAAGATTCAGGACAGGAGCTTCTTGCTCAACCTTTAAGAAGCAAGGAGTTGAAGTCCCTACTGGCTGATTCTGAAAGAACAAAGCTCATTACAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTCAAAAGACAGTTGCATATAAAGGAGGATGAGTTGGTGAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTGAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAATGCAAAATCTGTCATTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGCTGTACATGAGAAGTTGAAGGAACAAACTAAGGATGTTGATGCTGCACAATCAAAGGAGGTTTCCCTATTTTGGTGTGGTATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGTTGGAGTCAAGGAGAGCATTTGTCCGCGGAGTATGCAGGTTCTTTTACCACATTCTCAACAACATTAATGCTGAGACCTGGAAGGTATGAAATCAAGTTCTTGGTGGATGGAGAGTGGAAGCTTTCACCAGAATTTCCTACAGTCGGTGAGGGATTAATGAGAAATAACTTGTTAGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

297

Amino Acids

33.8

Weight (kDa)

7.07

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	217 - 286	1.9e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccII	CGCG	1 cut(s)	734
AciI	CCGC	2 cut(s)	732, 734
AcsI	RAATTY	4 cut(s)	61, 151, 477, 839
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	660, 851
AgsI	TTSAA	8 cut(s)	66, 210, 328, 448, 476, 537, 563, 607
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 113, 145
AluBI	AGCT	4 cut(s)	295, 361, 590, 829
AluI	AGCT	4 cut(s)	295, 361, 590, 829
Alw26I	GTCTC	1 cut(s)	775
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	4 cut(s)	61, 151, 477, 839
AseI	ATTAAT	3 cut(s)	546, 773, 863
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
BaeGI	GKGCMC	1 cut(s)	698
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	698, 809
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	169, 786
BmrFI	CCNGG	2 cut(s)	169, 786
BmsI	GCATC	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 314, 344, 419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	660, 851
Bse1I	ACTGG	2 cut(s)	342, 527
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	4 cut(s)	87, 436, 628, 820
BseLI	CCNNNNNNNGG	2 cut(s)	660, 851
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	666, 770
BseNI	ACTGG	2 cut(s)	342, 527
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	660, 851
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp1407I	TGTACA	1 cut(s)	592
BspACI	CCGC	2 cut(s)	732, 734
BspCNI	CTCAG	2 cut(s)	667, 771
BspFNI	CGCG	1 cut(s)	734
BspMI	ACCTGC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	342, 527
BssECI	CCNNGG	1 cut(s)	732
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	109, 414, 850
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	4 cut(s)	374, 618, 675, 779
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	4 cut(s)	87, 436, 628, 820
BstFNI	CGCG	1 cut(s)	734
BstMAI	GTCTC	1 cut(s)	775
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	786
BstSCI	CCNGG	2 cut(s)	167, 784
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	732
BtsCI	GGATG	4 cut(s)	87, 436, 628, 820
BveI	ACCTGC	1 cut(s)	734
Cfr42I	CCGCGG	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	188, 596
CviJI	RGCY	9 cut(s)	135, 295, 341, 361, 383, 485, 590, 674, 829
CviKI_1	RGCY	9 cut(s)	135, 295, 341, 361, 383, 485, 590, 674, 829
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	4 cut(s)	374, 618, 675, 779
DraIII	CACNNNGTG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	784
FaeI	CATG	2 cut(s)	191, 599
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	187, 595
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	4 cut(s)	74, 443, 635, 827
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	633
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	191, 599
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	6 cut(s)	184, 230, 281, 344, 399, 712
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	5 cut(s)	157, 451, 502, 825, 866
Hpy166II	GTNNAC	2 cut(s)	442, 455
Hpy188I	TCNGA	3 cut(s)	141, 241, 349
Hpy188III	TCNNGA	3 cut(s)	66, 285, 537
Hpy8I	GTNNAC	2 cut(s)	442, 455
HpyAV	CCTTC	2 cut(s)	601, 783
HpyCH4III	ACNGT	3 cut(s)	109, 414, 850
HpyCH4V	TGCA	5 cut(s)	418, 512, 635, 685, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	4 cut(s)	374, 618, 675, 779
Hsp92II	CATG	2 cut(s)	191, 599
KspI	CCGCGG	1 cut(s)	735
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	213, 515, 563
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	12, 108, 135, 220, 413, 421, 640, 850
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 786
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	1 cut(s)	740
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	2 cut(s)	191, 599
NmuCI	GTSAC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	3 cut(s)	546, 773, 863
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SacII	CCGCGG	1 cut(s)	735
SaqAI	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
SatI	GCNGC	1 cut(s)	633
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	169, 786
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	846
Sfr303I	CCGCGG	1 cut(s)	735
SgrBI	CCGCGG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
SsiI	CCGC	2 cut(s)	732, 734
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	167, 784
TaaI	ACNGT	3 cut(s)	109, 414, 850
TaqI	TCGA	1 cut(s)	53
TasI	AATT	8 cut(s)	61, 71, 122, 151, 210, 477, 494, 839
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	5 cut(s)	184, 230, 281, 344, 399
Tru1I	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
Tru9I	TTAA	6 cut(s)	125, 276, 311, 546, 773, 863
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	285, 810
VspI	ATTAAT	3 cut(s)	546, 773, 863
XapI	RAATTY	4 cut(s)	61, 151, 477, 839
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.