Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

59538470 .. 59541541

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCTGGTGGAGAAGATATTCAATTCCCACTAGAGTTGGAGGAATCGTCGTCAGTACCGGCAGAAGCTCATGTTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAGTAATGAGGCTTTGGTGAAATTGGCAGAAGAAAATGCAAAATCTGTCCTTCCAGTTGGTTCAAGAAAGATTAATGGAAAATACATTCAATCTCATCTTCTTTCCCGTTTAGAAGGCATTGACTTACTGAAAATTGATGAGATGGGTCACTTCATTACAAAAGAAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

100

Amino Acids

10.96

Weight (kDa)

4.88

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	23, 192, 218
AluBI	AGCT	2 cut(s)	68, 109
AluI	AGCT	2 cut(s)	68, 109
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	157
BccI	CCATC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	3 cut(s)	68, 109, 140
CviKI_1	RGCY	3 cut(s)	68, 109, 140
CviQI	GTAC	1 cut(s)	56
FaeI	CATG	1 cut(s)	74
FaiI	YATR	1 cut(s)	72
FatI	CATG	1 cut(s)	70
FspBI	CTAG	1 cut(s)	32
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	44, 95
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	192
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	188, 236
HpyCH4V	TGCA	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	4 cut(s)	72, 84, 89, 195
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	26, 170, 218
MluCI	AATT	3 cut(s)	23, 149, 261
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	2 cut(s)	34, 130
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	3 cut(s)	90, 125, 201
MspI	CCGG	1 cut(s)	59
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	44, 95
PshBI	ATTAAT	1 cut(s)	201
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	90, 125, 201
SetI	ASST	3 cut(s)	70, 111, 124
Sse9I	AATT	3 cut(s)	23, 149, 261
SspMI	CTAG	1 cut(s)	32
TasI	AATT	3 cut(s)	23, 149, 261
TfiI	GAWTC	2 cut(s)	44, 95
Tru1I	TTAA	3 cut(s)	90, 125, 201
Tru9I	TTAA	3 cut(s)	90, 125, 201
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	99, 271
VspI	ATTAAT	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.