Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

3047449 .. 3053034

Gene Structure 5586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCAAGAAAAGGTTCAAGAAAGTTGGAATGGAGAAATATCCGTCCACTTCCACACATTGTAACTACTGGGAAATTAAAGTTGAGCTATCAGAGGTTGATCTTGATGGGTTCTGAAGTTTCTACTGGGAAGCATCCCCTGAACCATTTCTTCTGGAGAGTACATTCAATTCCCACTAGTTTGGAGGAATCATCATCAGCACATGCAGAAACCTATAGCGGAAACGATGAATATACAGATAAAGATTTGCAGGAGGAACTTCCTTCTCAGCCTTTAAGAAGTAATGAGTTGCAGTCACTGCTAGCTGATTCTGAAAGAACAAAGCTCGTCAAAAAACTAAGTGAAGCCAATCAACAAAATCGGTTTCTCAAACGACAGTTGCATATAAAGGAGGATGCGTTGGTTAACTTCAAAAGTGAACTTGCTGTCTTGGAACTTCAAATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACACCAATTCTGTCATTCCTGAAGGTTCAAGAAAGATTAATGGGAAATACATTCAATCCCACCTTCTTTCCCGTTTAGAAGCTGTACATGAAAAGTTGAAGGAACAGATAAAGGATGTTGGTGCTGCACAATCCAAGGAGGTTCCCCTATTCTGGTGCGGCATGGCTGAGAGTGTGCAAGTTATGGGCACTTTTGATGGATGGAGTCAAGGAGAGGATTTATCTCCAGAGTACACTGGTTCTTTCACTACATTCTCGACAACATTAATGCTGAGACCTGGAAGGTACGAAATCAAGTTCTTGGTTGATGGAGAATGGAAACTATCACCAGAATTTCCTACAGTTGGTGAGGGATTAACAAAAAATAACTTGTTAATCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

6.48

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	207 - 281	2.6e-15	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	219, 630
AcsI	RAATTY	2 cut(s)	441, 803
AcuI	CTGAAG	2 cut(s)	135, 513
AfaI	GTAC	4 cut(s)	162, 558, 704, 758
AfiI	CCNNNNNNNGG	2 cut(s)	624, 815
AgsI	TTSAA	7 cut(s)	18, 168, 412, 440, 501, 527, 571
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	4 cut(s)	87, 305, 325, 554
AluI	AGCT	4 cut(s)	87, 305, 325, 554
Alw26I	GTCTC	1 cut(s)	739
AlwNI	CAGNNNCTG	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	441, 803
AseI	ATTAAT	2 cut(s)	510, 737
Asp700I	GAANNNNTTC	2 cut(s)	13, 146
AsuHPI	GGTGA	3 cut(s)	466, 789, 830
AsuNHI	GCTAGC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	662
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	100, 662, 666, 773
BciT130I	CCWGG	1 cut(s)	750
BcoDI	GTCTC	1 cut(s)	739
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	2 cut(s)	177, 302
BfmI	CTRYAG	2 cut(s)	214, 810
BisI	GCNGC	2 cut(s)	597, 631
BlsI	GCNGC	2 cut(s)	598, 632
Bme1390I	CCNGG	1 cut(s)	750
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	2 cut(s)	78, 135
BmsI	GCATC	2 cut(s)	142, 385
BmtI	GCTAGC	1 cut(s)	305
BmuI	ACTGGG	2 cut(s)	78, 135
BpmI	CTGGAG	2 cut(s)	175, 681
BsaI	GGTCTC	1 cut(s)	739
BsaJI	CCNNGG	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	624, 815
Bse1I	ACTGG	3 cut(s)	73, 130, 712
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	4 cut(s)	133, 400, 592, 677
BseLI	CCNNNNNNNGG	2 cut(s)	624, 815
BseMII	CTCAG	3 cut(s)	281, 630, 734
BseNI	ACTGG	3 cut(s)	73, 130, 712
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	624, 815
BsmAI	GTCTC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	219, 630
BspCNI	CTCAG	3 cut(s)	280, 631, 735
BspLI	GGNNCC	1 cut(s)	615
BspOI	GCTAGC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	739
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	3 cut(s)	73, 130, 712
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	378, 814
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	267, 338, 639, 743
BstF5I	GGATG	4 cut(s)	133, 400, 592, 677
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	748
BstSFI	CTRYAG	2 cut(s)	214, 810
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	181
BtsCI	GGATG	4 cut(s)	133, 400, 592, 677
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 705
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	298
Csp6I	GTAC	4 cut(s)	161, 557, 703, 757
CviAII	CATG	3 cut(s)	203, 560, 634
CviJI	RGCY	8 cut(s)	87, 271, 305, 325, 347, 449, 554, 638
CviKI_1	RGCY	8 cut(s)	87, 271, 305, 325, 347, 449, 554, 638
CviQI	GTAC	4 cut(s)	161, 557, 703, 757
DdeI	CTNAG	4 cut(s)	267, 338, 639, 743
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	739
Eco57I	CTGAAG	2 cut(s)	135, 513
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	3 cut(s)	206, 563, 637
FaiI	YATR	8 cut(s)	204, 216, 234, 384, 386, 561, 635, 656
FatI	CATG	3 cut(s)	202, 559, 633
Fnu4HI	GCNGC	2 cut(s)	597, 631
FokI	GGATG	4 cut(s)	120, 407, 599, 684
Fsp4HI	GCNGC	2 cut(s)	597, 631
FspBI	CTAG	2 cut(s)	177, 302
GluI	GCNGC	2 cut(s)	597, 631
GsuI	CTGGAG	2 cut(s)	175, 681
Hin1II	CATG	3 cut(s)	206, 563, 637
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	188, 308, 676
HpaI	GTTAAC	1 cut(s)	406
HphI	GGTGA	3 cut(s)	466, 789, 830
Hpy166II	GTNNAC	4 cut(s)	47, 406, 419, 705
Hpy188I	TCNGA	3 cut(s)	93, 115, 313
Hpy188III	TCNNGA	8 cut(s)	6, 18, 103, 154, 491, 501, 698, 727
Hpy8I	GTNNAC	4 cut(s)	47, 406, 419, 705
HpyAV	CCTTC	5 cut(s)	273, 488, 545, 565, 747
HpyCH4III	ACNGT	2 cut(s)	378, 814
HpyCH4V	TGCA	6 cut(s)	206, 250, 292, 382, 599, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	267, 338, 639, 743
Hsp92II	CATG	3 cut(s)	206, 563, 637
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	99
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	142, 385
MaeI	CTAG	2 cut(s)	177, 302
MaeIII	GTNAC	2 cut(s)	61, 294
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	142, 479
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	6 cut(s)	74, 168, 441, 458, 478, 803
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	87, 178, 247, 385, 604, 679, 814
MroXI	GAANNNNTTC	2 cut(s)	13, 146
MseI	TTAA	7 cut(s)	77, 275, 405, 510, 737, 827, 845
MspR9I	CCNGG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	1 cut(s)	99
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	206, 563, 637
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	206
PdmI	GAANNNNTTC	2 cut(s)	13, 146
PfeI	GAWTC	2 cut(s)	188, 308
PkrI	GCNGC	2 cut(s)	598, 632
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PshBI	ATTAAT	2 cut(s)	510, 737
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	4 cut(s)	162, 558, 704, 758
RsaNI	GTAC	4 cut(s)	161, 557, 703, 757
SaqAI	TTAA	7 cut(s)	77, 275, 405, 510, 737, 827, 845
SatI	GCNGC	2 cut(s)	597, 631
Sau3AI	GATC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	2 cut(s)	142, 385
SfcI	CTRYAG	2 cut(s)	214, 810
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	6 cut(s)	74, 168, 441, 458, 478, 803
SsiI	CCGC	2 cut(s)	219, 630
SspMI	CTAG	2 cut(s)	177, 302
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	378, 814
TaqI	TCGA	1 cut(s)	728
TasI	AATT	6 cut(s)	74, 168, 441, 458, 478, 803
TatI	WGTACW	3 cut(s)	160, 556, 702
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	2 cut(s)	188, 308
Tru1I	TTAA	7 cut(s)	77, 275, 405, 510, 737, 827, 845
Tru9I	TTAA	7 cut(s)	77, 275, 405, 510, 737, 827, 845
TscAI	CASTG	2 cut(s)	303, 712
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	243, 576
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	303, 712
VspI	ATTAAT	2 cut(s)	510, 737
XapI	RAATTY	2 cut(s)	441, 803
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	2 cut(s)	13, 146
XspI	CTAG	2 cut(s)	177, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.