Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Reverse (-)

41109 .. 42964

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaaaacgacgtgacgacggacctcgcgccggagctcctcgactctgagcttgcggagctcgtcgaccataaaagccaggccgtcttcaccgcgtgtttcggcctcgttttgctgcgaaatgacaaagcaacgtttgaggtcgtcgattggatctgcaccatcatcaatgtatcacctccgtcgacttcatcgttggccttgtctcgccgccgaccatctagaccagagaccgaaaggctgtattgccttgacaaacaagtgttgtggttgtcaagcaaaaattcaagaaaattggattggaaaagcatccacctacctcaatatactgtgaatagttggaaattaaagttgatctttcagaggttgacaaattctcaagttttcaccgggaagcattccctgaatcatgtcttgtggagaagatattcaattcccactagtttggaggaatcgtcgtcagtaccagcagaagcttatggtagcaatgatgaacttaaagattcagggcaggagcttctctctcaacctttaagaagtgatgaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

183

Amino Acids

20.86

Weight (kDa)

5.83

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	66, 185
AccII	CGCG	2 cut(s)	29, 95
AciI	CCGC	3 cut(s)	56, 93, 211
AclI	AACGTT	1 cut(s)	134
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	2 cut(s)	283, 373
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	288, 432
AhlI	ACTAGT	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	5 cut(s)	37, 52, 61, 476, 517
AluI	AGCT	5 cut(s)	37, 52, 61, 476, 517
Alw21I	GWGCWC	2 cut(s)	39, 63
Alw26I	GTCTC	2 cut(s)	210, 224
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	3 cut(s)	81, 103, 198
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	283, 373
Asp700I	GAANNNNTTC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	82, 168, 379
AvaII	GGWCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	39, 63
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	39, 63
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	170, 226
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	210, 224
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	222, 441
BisI	GCNGC	2 cut(s)	116, 211
BlsI	GCNGC	2 cut(s)	117, 212
Bme1390I	CCNGG	2 cut(s)	80, 391
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	80, 391
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	29, 95
BshFI	GGCC	3 cut(s)	83, 105, 200
BsiHKAI	GWGCWC	2 cut(s)	39, 63
BsiSI	CCGG	2 cut(s)	32, 390
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	210, 224
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	83, 105, 200
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	39, 63
Bsp143I	GATC	2 cut(s)	153, 354
BspACI	CCGC	3 cut(s)	56, 93, 211
BspANI	GGCC	3 cut(s)	83, 105, 200
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	29, 95
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	493
BssMI	GATC	2 cut(s)	153, 354
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	2 cut(s)	29, 95
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	156, 357
BstMAI	GTCTC	2 cut(s)	210, 224
BstMBI	GATC	2 cut(s)	153, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 389
BstUI	CGCG	2 cut(s)	29, 95
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	83, 105, 200
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	464
CspCI	CAANNNNNGTGG	2 cut(s)	248, 283
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	155, 356
DpnII	GATC	2 cut(s)	153, 354
DraIII	CACNNNGTG	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	37, 61
Eco24I	GRGCYC	2 cut(s)	39, 63
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	37, 61
EcoICRI	GAGCTC	2 cut(s)	37, 61
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	39, 63
FaeI	CATG	1 cut(s)	413
FaiI	YATR	5 cut(s)	72, 327, 411, 480, 550
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	66, 185
Fnu4HI	GCNGC	2 cut(s)	116, 211
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	39, 63
Fsp4HI	GCNGC	2 cut(s)	116, 211
FspBI	CTAG	2 cut(s)	222, 441
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	116, 211
HaeIII	GGCC	3 cut(s)	83, 105, 200
HapII	CCGG	2 cut(s)	32, 390
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	3 cut(s)	67, 186, 369
HindII	GTYRAC	3 cut(s)	67, 186, 369
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	44, 406, 452, 503
HpaII	CCGG	2 cut(s)	32, 390
HphI	GGTGA	3 cut(s)	82, 168, 379
Hpy166II	GTNNAC	3 cut(s)	67, 186, 369
Hpy188I	TCNGA	2 cut(s)	49, 363
Hpy188III	TCNNGA	2 cut(s)	222, 288
Hpy8I	GTNNAC	3 cut(s)	67, 186, 369
Hpy99I	CGWCG	6 cut(s)	14, 22, 68, 149, 187, 460
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	12, 134
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	2 cut(s)	12, 134
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	153, 354
LmnI	GCTCC	4 cut(s)	34, 42, 58, 514
LpnPI	CCDG	9 cut(s)	45, 65, 92, 240, 403, 416, 480, 492, 497
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	222, 441
MaeII	ACGT	2 cut(s)	12, 134
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	155, 356
MboI	GATC	2 cut(s)	153, 354
MboII	GAAGA	2 cut(s)	79, 435
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	39, 63
MluCI	AATT	5 cut(s)	283, 293, 344, 373, 432
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	9 cut(s)	35, 50, 116, 133, 189, 330, 357, 442, 538
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	3 cut(s)	347, 498, 533
MspI	CCGG	2 cut(s)	32, 390
MspR9I	CCNGG	2 cut(s)	80, 391
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	29, 95
MwoI	GCNNNNNNNGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	2 cut(s)	153, 354
NlaIII	CATG	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	406, 452, 503
PkrI	GCNGC	2 cut(s)	117, 212
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	2 cut(s)	39, 63
Psp1406I	AACGTT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SacI	GAGCTC	2 cut(s)	39, 63
SalI	GTCGAC	2 cut(s)	65, 184
SaqAI	TTAA	3 cut(s)	347, 498, 533
SatI	GCNGC	2 cut(s)	116, 211
Sau3AI	GATC	2 cut(s)	153, 354
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	80, 391
SduI	GDGCHC	2 cut(s)	39, 63
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	5 cut(s)	283, 293, 344, 373, 432
SsiI	CCGC	3 cut(s)	56, 93, 211
SspMI	CTAG	2 cut(s)	222, 441
SstI	GAGCTC	2 cut(s)	39, 63
StyD4I	CCNGG	2 cut(s)	78, 389
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	2 cut(s)	15, 137
TaqI	TCGA	4 cut(s)	42, 66, 147, 185
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	5 cut(s)	283, 293, 344, 373, 432
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	406, 452, 503
Tru1I	TTAA	3 cut(s)	347, 498, 533
Tru9I	TTAA	3 cut(s)	347, 498, 533
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	180, 507
TspGWI	ACGGA	2 cut(s)	35, 171
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	283, 373
XbaI	TCTAGA	1 cut(s)	221
XmiI	GTMKAC	2 cut(s)	66, 185
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	2 cut(s)	222, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.