AT5G42410

SAUR-like auxin-responsive protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002355
Physical Location & Seq
Forward (+)
16964650 .. 16965261
612 bp
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UTR
Exon/CDS
Intron
AT5G42410.1

Sequence Viewer

Length: 336 bp
ATGAGAACCTTGGTGAAGAAGCTACTATGGTGCGGAGCGAAGAACATTTCATCTTCGAGAACATCGGCATTACCAGAAGAAGGAAGAGTTCGGGTTTACGTAGGTAAAGATAAAGAGAGTCAATGCAAGCTAGAAGTTGAAGCTAATTTGCTAAACCACCCAATGTTGGAAGATCTATTGAGGTTGTCTGAGGAAGAATTCGGACACTCGTACGAAGGAGCCTTGAGGATTGCTTGCGAGATTGATGTCTTCATCAAACTGGTTAATCTACACAAAACAACTAATCATCATAACAATTCCGTTTGCTTTCACAATAATTCCACAAAATTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

7.73

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 89 7.1e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 80, 166
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 3 cut(s) 22, 130, 143
AluI AGCT 3 cut(s) 22, 130, 143
ApoI RAATTY 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 241
BfaI CTAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 166
Bse1I ACTGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 80, 166
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 264
BsiWI CGTACG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 80, 166
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 128, 235
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstSNI TACGTA 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 128, 235
Csp6I GTAC 1 cut(s) 211
CviJI RGCY 4 cut(s) 22, 130, 143, 221
CviKI_1 RGCY 4 cut(s) 22, 130, 143, 221
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 2 cut(s) 28, 291
FspBI CTAG 1 cut(s) 131
HinfI GANTC 1 cut(s) 118
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 190, 203
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 74, 209
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 35, 218
LpnPI CCDG 2 cut(s) 87, 245
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 8 cut(s) 28, 45, 52, 89, 96, 182, 206, 241
MflI RGATCY 1 cut(s) 172
MluCI AATT 5 cut(s) 145, 197, 295, 316, 326
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 174, 184, 219
MseI TTAA 1 cut(s) 264
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 220
Pfl23II CGTACG 1 cut(s) 210
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 100
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 127
SetI ASST 7 cut(s) 11, 24, 102, 106, 132, 145, 185
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 5 cut(s) 145, 197, 295, 316, 326
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 56
TasI AATT 5 cut(s) 145, 197, 295, 316, 326
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TspDTI ATGAA 2 cut(s) 39, 241
TspGWI ACGGA 1 cut(s) 289
XapI RAATTY 1 cut(s) 197
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.