RchiOBHm_Chr7g0217801

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002355
Physical Location & Seq
Forward (+)
35724609 .. 35724890
282 bp
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UTR
Exon/CDS
Intron
PRQ19493

Sequence Viewer

Length: 282 bp
ATGATGATGATGAGTAGCATTGTGAAGAAGTACTTCTTGTTCTGTGGAGCAGAGGGGTTTCCCTCGATCTCAGACTCGGACGACTATCGAGTAGTGCCTGTGCCACAAGCCGGTCAAGTCCGTGTGTGCGTTGGAAGAGACATTGACATGATGTGCAAGTTCGAGATGGAAGCCAATTACCTAAACTACCCACTCTTCCAGAGTCTACTGGATCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGGGTGTGACGTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

93

Amino Acids

10.52

Weight (kDa)

4.28

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 25 - 92 5.5e-11 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 205
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 219
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 256
BccI CCATC 2 cut(s) 160, 242
BcoDI GTCTC 1 cut(s) 132
BmcAI AGTACT 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 66, 211
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 2 cut(s) 66, 211
Bst6I CTCTTC 2 cut(s) 130, 200
BstDEI CTNAG 2 cut(s) 70, 257
BstKTI GATC 2 cut(s) 69, 214
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 66, 211
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 110, 173, 254
CviKI_1 RGCY 3 cut(s) 110, 173, 254
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 70, 257
DpnI GATC 2 cut(s) 68, 213
DpnII GATC 2 cut(s) 66, 211
Eam1104I CTCTTC 2 cut(s) 130, 200
EarI CTCTTC 2 cut(s) 130, 200
EciI GGCGGA 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 20, 52
FatI CATG 1 cut(s) 147
FblI GTMKAC 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 256
HapII CCGG 1 cut(s) 111
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 74, 202
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 206, 277
Hpy188I TCNGA 2 cut(s) 73, 79
Hpy188III TCNNGA 2 cut(s) 163, 199
Hpy8I GTNNAC 2 cut(s) 206, 277
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 70, 257
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 2 cut(s) 66, 211
LmnI GCTCC 2 cut(s) 47, 251
LpnPI CCDG 4 cut(s) 111, 124, 194, 212
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 68, 213
MboI GATC 2 cut(s) 66, 211
MboII GAAGA 3 cut(s) 37, 147, 187
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 175
MlyI GAGTC 2 cut(s) 68, 211
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 46, 73
MroXI GAANNNNTTC 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 1 cut(s) 111
NdeII GATC 2 cut(s) 66, 211
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 32
PleI GAGTC 2 cut(s) 68, 210
PpsI GAGTC 2 cut(s) 68, 210
PspN4I GGNNCC 1 cut(s) 253
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 146
Sau3AI GATC 2 cut(s) 66, 211
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 2 cut(s) 68, 211
SduI GDGCHC 1 cut(s) 256
SetI ASST 2 cut(s) 183, 276
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 175
SsiI CCGC 1 cut(s) 219
TaiI ACGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 65, 88, 162
TasI AATT 1 cut(s) 175
TatI WGTACW 1 cut(s) 30
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.