RchiOBHm_Chr7g0217911

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002355
Physical Location & Seq
Forward (+)
35814626 .. 35815066
441 bp
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UTR
Exon/CDS
Intron
PRQ19504

Sequence Viewer

Length: 381 bp
ATGATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCATTTCAGACTCAGACGACTCTCGAGTAGTGCCTATGACACAAGCCGGTCAAGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTAGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAATCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACACTAATGCTATCTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

126

Amino Acids

14.24

Weight (kDa)

4.85

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 100 3.4e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 199
AciI CCGC 2 cut(s) 213, 318
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 3 cut(s) 28, 208, 334
AluI AGCT 3 cut(s) 28, 208, 334
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 81
BanII GRGCYC 2 cut(s) 210, 250
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 2 cut(s) 154, 236
BcoDI GTCTC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 210, 250
Bsp143I GATC 3 cut(s) 139, 271, 340
BspACI CCGC 2 cut(s) 213, 318
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 3 cut(s) 139, 271, 340
Bst6I CTCTTC 2 cut(s) 124, 194
BstDEI CTNAG 2 cut(s) 70, 251
BstKTI GATC 3 cut(s) 142, 274, 343
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 3 cut(s) 139, 271, 340
Cfr10I RCCGGY 1 cut(s) 104
CviAII CATG 1 cut(s) 328
CviJI RGCY 6 cut(s) 28, 104, 167, 208, 248, 334
CviKI_1 RGCY 6 cut(s) 28, 104, 167, 208, 248, 334
DdeI CTNAG 2 cut(s) 70, 251
DpnI GATC 3 cut(s) 141, 273, 342
DpnII GATC 3 cut(s) 139, 271, 340
Eam1104I CTCTTC 2 cut(s) 124, 194
EarI CTCTTC 2 cut(s) 124, 194
EciI GGCGGA 2 cut(s) 202, 307
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 210, 250
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 210, 250
FaeI CATG 1 cut(s) 331
FaiI YATR 2 cut(s) 95, 329
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 210, 250
GsuI CTGGAG 1 cut(s) 224
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 331
HinfI GANTC 3 cut(s) 68, 77, 196
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 4 cut(s) 67, 73, 144, 340
Hpy188III TCNNGA 2 cut(s) 81, 193
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 70, 251
Hsp92II CATG 1 cut(s) 331
Kzo9I GATC 3 cut(s) 139, 271, 340
LmnI GCTCC 4 cut(s) 41, 205, 245, 331
LpnPI CCDG 4 cut(s) 118, 188, 206, 319
MalI GATC 3 cut(s) 141, 273, 342
MboI GATC 3 cut(s) 139, 271, 340
MboII GAAGA 5 cut(s) 34, 141, 181, 278, 281
MhlI GDGCHC 2 cut(s) 210, 250
MluCI AATT 2 cut(s) 169, 376
MlyI GAGTC 3 cut(s) 62, 71, 205
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 2 cut(s) 67, 325
MspI CCGG 1 cut(s) 105
NdeII GATC 3 cut(s) 139, 271, 340
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 328
PleI GAGTC 3 cut(s) 62, 71, 204
PpsI GAGTC 3 cut(s) 62, 71, 204
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 139, 271, 340
SchI GAGTC 3 cut(s) 62, 71, 205
SduI GDGCHC 2 cut(s) 210, 250
SetI ASST 5 cut(s) 30, 177, 210, 232, 336
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 169, 376
SsiI CCGC 2 cut(s) 213, 318
SstI GAGCTC 1 cut(s) 210
TaqI TCGA 2 cut(s) 82, 270
TasI AATT 2 cut(s) 169, 376
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 104
Van91I CCANNNNNTGG 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.