Rh7CG331700

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002355
Physical Location & Seq
Forward (+)
36689059 .. 36692504
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG331700.1

Sequence Viewer

Length: 387 bp
ATGATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCATTTCAGACTCAGACCTCTCGAGTAGTGCCTATGAGGCTATGACACAAGCCGGTCAAGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGTAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTTCGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAATCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACACTAATGCTATCTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

14.39

Weight (kDa)

4.83

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 102 4.2e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 205
AciI CCGC 2 cut(s) 219, 324
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 3 cut(s) 28, 214, 340
AluI AGCT 3 cut(s) 28, 214, 340
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 79
BanII GRGCYC 2 cut(s) 216, 256
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 160, 242
BcoDI GTCTC 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 276
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 216, 256
Bsp143I GATC 3 cut(s) 145, 277, 346
BspACI CCGC 2 cut(s) 219, 324
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 3 cut(s) 145, 277, 346
Bst6I CTCTTC 2 cut(s) 130, 200
BstDEI CTNAG 2 cut(s) 70, 257
BstKTI GATC 3 cut(s) 148, 280, 349
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 145, 277, 346
BstMWI GCNNNNNNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 110
CviAII CATG 1 cut(s) 334
CviJI RGCY 7 cut(s) 28, 98, 110, 173, 214, 254, 340
CviKI_1 RGCY 7 cut(s) 28, 98, 110, 173, 214, 254, 340
DdeI CTNAG 2 cut(s) 70, 257
DpnI GATC 3 cut(s) 147, 279, 348
DpnII GATC 3 cut(s) 145, 277, 346
Eam1104I CTCTTC 2 cut(s) 130, 200
EarI CTCTTC 2 cut(s) 130, 200
EciI GGCGGA 2 cut(s) 208, 313
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 216, 256
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 216, 256
FaeI CATG 1 cut(s) 337
FaiI YATR 3 cut(s) 93, 101, 335
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 205
FriOI GRGCYC 2 cut(s) 216, 256
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 111
Hin1II CATG 1 cut(s) 337
HinfI GANTC 2 cut(s) 68, 202
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 67, 73, 150, 346
Hpy188III TCNNGA 2 cut(s) 79, 199
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 70, 257
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 3 cut(s) 145, 277, 346
LmnI GCTCC 4 cut(s) 41, 211, 251, 337
LpnPI CCDG 4 cut(s) 124, 194, 212, 325
MalI GATC 3 cut(s) 147, 279, 348
MboI GATC 3 cut(s) 145, 277, 346
MboII GAAGA 5 cut(s) 34, 147, 187, 284, 287
MhlI GDGCHC 2 cut(s) 216, 256
MluCI AATT 2 cut(s) 175, 382
MlyI GAGTC 2 cut(s) 62, 211
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 4 cut(s) 67, 86, 88, 331
MspI CCGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 3 cut(s) 145, 277, 346
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 334
PleI GAGTC 2 cut(s) 62, 210
PpsI GAGTC 2 cut(s) 62, 210
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 145, 277, 346
SchI GAGTC 2 cut(s) 62, 211
SduI GDGCHC 2 cut(s) 216, 256
SetI ASST 5 cut(s) 30, 78, 183, 216, 342
Sfr274I CTCGAG 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 2 cut(s) 175, 382
SsiI CCGC 2 cut(s) 219, 324
SstI GAGCTC 1 cut(s) 216
TaqI TCGA 3 cut(s) 80, 246, 276
TasI AATT 2 cut(s) 175, 382
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.