Rh7DG311800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002355
Physical Location & Seq
Forward (+)
36594943 .. 36595338
396 bp
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UTR
Exon/CDS
Intron
Rh7DG311800.1

Sequence Viewer

Length: 396 bp
ATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAGGGGTTTCCCTCCATCTCTGACTCGGACGACTCTCGTGTAGTGCCTGCGCCACAAGCCGGTCATGTCCGTGTGTACGTTGGAAGAGATATTAACATGATGTGCAAGTTTGAGATAGAAGCCAATTACTTAAACCACCCACTATTCCGGAGTCTACTCCAGCTCTCCGCAGATCAAGAGTTCGGTTATTCCTACGATGGAGCTCTAAGAATAGCGTGCGACGTCGATCTCTTCCATTACATTCTTCATCTCCTCGATACCAGCAATCCCTCTGCCCATTACATGGAGCTTTCTGATCTCATTTCCAAGTTCTACAGCGCTAGTGCTACTATAACTACACTCGCTAAAACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

5.88

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 98 6.7e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 1 cut(s) 116
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 98, 322
AluBI AGCT 4 cut(s) 22, 202, 242, 328
AluI AGCT 4 cut(s) 22, 202, 242, 328
Alw21I GWGCWC 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 186
Aor51HI AGCGCT 1 cut(s) 358
AspLEI GCGC 2 cut(s) 91, 359
BanII GRGCYC 1 cut(s) 244
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 2 cut(s) 62, 230
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 322
Bse118I RCCGGY 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 98, 322
BseRI GAGGAG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 99, 187
BslI CCNNNNNNNGG 2 cut(s) 98, 322
Bsp1286I GDGCHC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 211, 265, 334
BspACI CCGC 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 3 cut(s) 211, 265, 334
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst6I CTCTTC 2 cut(s) 118, 275
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 87, 256
BstDEI CTNAG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 91, 359
BstKTI GATC 3 cut(s) 214, 268, 337
BstMBI GATC 3 cut(s) 211, 265, 334
BstMWI GCNNNNNNNGC 2 cut(s) 95, 389
BstSFI CTRYAG 1 cut(s) 352
Cac8I GCNNGC 2 cut(s) 87, 256
CfoI GCGC 2 cut(s) 91, 359
Cfr10I RCCGGY 1 cut(s) 98
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 104, 136, 322
CviJI RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
CviKI_1 RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 213, 267, 336
DpnII GATC 3 cut(s) 211, 265, 334
Eam1104I CTCTTC 2 cut(s) 118, 275
EarI CTCTTC 2 cut(s) 118, 275
Ecl136II GAGCTC 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 3 cut(s) 107, 139, 325
FaiI YATR 4 cut(s) 105, 137, 323, 371
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 3 cut(s) 103, 135, 321
FblI GTMKAC 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 90, 358
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 360
HapII CCGG 2 cut(s) 99, 187
HhaI GCGC 2 cut(s) 91, 359
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 107, 139, 325
Hin6I GCGC 2 cut(s) 89, 357
HinP1I GCGC 2 cut(s) 89, 357
HinfI GANTC 3 cut(s) 62, 71, 190
HpaII CCGG 2 cut(s) 99, 187
Hpy166II GTNNAC 2 cut(s) 115, 194
Hpy188I TCNGA 3 cut(s) 61, 67, 334
Hpy188III TCNNGA 2 cut(s) 187, 215
Hpy8I GTNNAC 2 cut(s) 115, 194
Hpy99I CGWCG 2 cut(s) 263, 266
HpyCH4IV ACGT 2 cut(s) 117, 261
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 389
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 117, 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 107, 139, 325
HspAI GCGC 2 cut(s) 89, 357
Kpn2I TCCGGA 1 cut(s) 186
Kzo9I GATC 3 cut(s) 211, 265, 334
LmnI GCTCC 3 cut(s) 35, 239, 325
LpnPI CCDG 5 cut(s) 99, 112, 200, 212, 313
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 117, 261
MalI GATC 3 cut(s) 213, 267, 336
MboI GATC 3 cut(s) 211, 265, 334
MboII GAAGA 4 cut(s) 28, 135, 262, 275
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 163
MlyI GAGTC 3 cut(s) 56, 65, 199
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 61, 302, 319
MroI TCCGGA 1 cut(s) 186
MseI TTAA 2 cut(s) 132, 170
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 2 cut(s) 99, 187
MwoI GCNNNNNNNGC 2 cut(s) 95, 389
NdeII GATC 3 cut(s) 211, 265, 334
NlaIII CATG 3 cut(s) 107, 139, 325
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 3 cut(s) 56, 65, 198
PpsI GAGTC 3 cut(s) 56, 65, 198
Psp124BI GAGCTC 1 cut(s) 244
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 132, 170
Sau3AI GATC 3 cut(s) 211, 265, 334
SchI GAGTC 3 cut(s) 56, 65, 199
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 24, 120, 204, 244, 264, 330
SfcI CTRYAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 244
TaiI ACGT 2 cut(s) 120, 264
TaqI TCGA 2 cut(s) 264, 294
TasI AATT 1 cut(s) 163
Tru1I TTAA 2 cut(s) 132, 170
Tru9I TTAA 2 cut(s) 132, 170
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.