RLG00000002436

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002355
Physical Location & Seq
Forward (+)
34176597 .. 34176959
363 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002436

Sequence Viewer

Length: 363 bp
ATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGCGGAGCAAAGGGGTTTCCCTCCATCTCAGACTTAGACGATTCTCAAGTAGTGCTTGTGCCACAAGCGGGTCAAGTCCGTGTGTACGTTGGAAGGGACATTGACATGATGCGCAAGTTCGAGATGGAAACCAATTACCTAAACCACCCACTATTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTTGGTTATTCCTACCATGGAGCCCTAAGAATAGCGTGCGACATCGACCTCTTCCACTACCTTCTTCATCTTCTTGAAACGAGGAACCCCTCTGCCCACTACATGGAGCTTTCCGATCTCATTTCAAAGTTCTACAGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

13.83

Weight (kDa)

5.4

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 25 - 98 5.4e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 193
AciI CCGC 3 cut(s) 33, 98, 207
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 98, 322
AgsI TTSAA 2 cut(s) 296, 345
AluBI AGCT 3 cut(s) 22, 202, 328
AluI AGCT 3 cut(s) 22, 202, 328
Alw21I GWGCWC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 144
BanII GRGCYC 2 cut(s) 204, 244
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 62, 148
BfaI CTAG 1 cut(s) 361
BfmI CTRYAG 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 241, 305
BmsI GCATC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 322
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 98, 322
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 98, 322
BsmFI GGGAC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 204, 244
Bsp143I GATC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 3 cut(s) 33, 98, 207
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 241, 305
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 58, 64, 245
BstDSI CCRYGG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 136, 236, 322
CviJI RGCY 4 cut(s) 22, 202, 242, 328
CviKI_1 RGCY 4 cut(s) 22, 202, 242, 328
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 58, 64, 245
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 204, 244
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 204, 244
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 139, 239, 325
FaiI YATR 3 cut(s) 137, 237, 323
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 69, 101
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 135, 235, 321
FauI CCCGC 1 cut(s) 91
FblI GTMKAC 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 204, 244
FspBI CTAG 1 cut(s) 361
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 218
HhaI GCGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 139, 239, 325
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 71, 190
Hpy166II GTNNAC 2 cut(s) 115, 194
Hpy188I TCNGA 2 cut(s) 61, 334
Hpy188III TCNNGA 3 cut(s) 151, 187, 293
Hpy8I GTNNAC 2 cut(s) 115, 194
HpyAV CCTTC 2 cut(s) 117, 290
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 58, 64, 245
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 139, 239, 325
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 4 cut(s) 35, 199, 239, 325
LpnPI CCDG 2 cut(s) 182, 200
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 361
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 28, 262, 275, 281
MhlI GDGCHC 2 cut(s) 204, 244
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 61, 278, 294, 319
MslI CAYNNNNRTG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 235
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 139, 239, 325
NlaIV GGNNCC 2 cut(s) 241, 305
NmeAIII GCCGAG 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 143
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 241, 305
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 199
SduI GDGCHC 2 cut(s) 204, 244
SetI ASST 7 cut(s) 24, 120, 171, 204, 270, 282, 330
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 163
SsiI CCGC 3 cut(s) 33, 98, 207
SspMI CTAG 1 cut(s) 361
SstI GAGCTC 1 cut(s) 204
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 150, 264
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.