Rorug07G0172200

Auxin responsive protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
14073574 .. 14084165
10592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0172200.1

Sequence Viewer

Length: 1530 bp
ATGAAGTTGGATAGCATTCTAGGATATCTGGAGAGCAAGACCATCTTAGTTACTGGAGCCACTGGCTTACTAGGAATGGTATTTGTGGAGAAGATACTAAGGGTTCAACCAAATATTGGAAAGCTTTACCTTCTTATAAGAGCTTCTGATGCCAACTCTGCCACATATCGCATGCGCAATGAGATTATAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGCACAGATTTTGAATCGTTTATTTCAAAAAAAGTAGTTGCTATTCCGGGAGACGTAGCTTCTGCAGAACTAGGAGTGAAAGGATTTGAATTGAGGGAACGTATGTGCAATGAAATACAAATTATACTTCATTCTGCAGCAACCGTGGATTTTAATGACAGGTATGATATTGCTTTGGATGTGAATACATTTGGGGTTCTGCATGTGTTGAACTTTGCGAAGAAGTGTTTGAAACTAGAAATGCTTGTTCACATATCAACTGCTTATGTGGGAGTCAGAAGGATTGGCCTTATACCGGAGGACTCCTCTCCAATGGATGAGCTGACAAAGGAAATCACTAAATCTGACTTGAAAGTACTGGAAAGGAACATGGTGGTGGACAAATTAAATGAACTAAAAGCACAAAATGCTTCAGAAAAGGTTATTACAAATAAGATGAAGGACCTGGGCGTTGCAAGGTCAAAGTTGTATGGTTGGCCAACTACTTATTTGTTTACAAAAGCGATGGCAGAAGTATATCTTGAACAATCAAAAGGTAATTTACCCATTACCATCATACGCCCAACTATAGTTACGAGCACTTACAAGGAACCATTTCCAGGTTGGCATCAAGGTTACAGATCCGTTAATGCTGTAATTGGTACTTTTTGGAAAGGGACACTGACATGCTTGCCTATGGATCCTACAGCTGTATTAGATTTGATTCCAGTTGATATGGTGGCAGATTCAATAATTACGGCGATGGTAGTGAATGCCAACAAATATCTTGAAAATCCTGGAATGATTTATCATGTGGGAACGTCCTTGAGAAATCCAATGAAAATGTCTGAGTTTAGAAATTTCATGTTCCAATACTGCACCAAAAATCCATGGCTTTATAAGGATGGAAGCCCGATCAAGGTTGAGAAGTTGAAAATGTTCACTACTATGGCTGCATTTCGTTCGTACATGCAAATCCGCTACATGTTACCATTAGAGGGATTAAAGTTCTTGAATAAAGAATTTGACCAATATTTTAAAGAATTATATGTTAACTATAACTGGAAAATCACATTTGCGATGCGGTTGGCTGAGTTGTACCGACCATTTTTGCTATACAAGGGCATCTTTGACGACACCAATTTGGAGAAGTTGCAAAGGATATCAAGAGAGAATTACAGAGACGCTGAAATCTTTAATTTTGATCCAAGGTGCATCGACTGGGAAGACTACATAATGCGTACTCACATCCCTGGCCTTCGGAAACATGTTATGATCAAACATAGCCAGAGTCAGAGTCAGAGTCAGAGCCAGAGCCGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

58.79

Weight (kDa)

9.11

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_4 PF07993 17 - 319 2.4e-68 Male sterility protein
Sterile PF03015 424 - 493 1.1e-14 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 137, 1104
Acc16I TGCGCA 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 2 cut(s) 1183, 1288
AclWI GGATC 4 cut(s) 840, 899, 912, 1403
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 2 cut(s) 1063, 1226
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 5 cut(s) 582, 868, 1172, 1304, 1447
AfiI CCNNNNNNNGG 5 cut(s) 116, 520, 824, 1123, 1202
AflIII ACRYGT 2 cut(s) 1188, 1471
AjnI CCWGG 4 cut(s) 669, 823, 1000, 1456
AluBI AGCT 5 cut(s) 124, 143, 284, 547, 914
AluI AGCT 5 cut(s) 124, 143, 284, 547, 914
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 2 cut(s) 270, 1380
AlwI GGATC 4 cut(s) 840, 899, 912, 1403
AoxI GGCC 3 cut(s) 511, 701, 1459
ApeKI GCWGC 2 cut(s) 362, 1157
ApoI RAATTY 2 cut(s) 1063, 1226
Asp700I GAANNNNTTC 2 cut(s) 819, 1142
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 667
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 667
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 703
BamHI GGATCC 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 1437
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 374, 1144
BccI CCATC 5 cut(s) 50, 724, 785, 961, 1103
BceAI ACGGC 1 cut(s) 978
BcgI CGANNNNNNTGC 2 cut(s) 1149, 1183
BciT130I CCWGG 4 cut(s) 671, 825, 1002, 1458
BclI TGATCA 1 cut(s) 1479
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 270, 1380
BfaI CTAG 4 cut(s) 20, 71, 296, 461
BfmI CTRYAG 4 cut(s) 288, 360, 792, 909
BisI GCNGC 2 cut(s) 363, 1158
BlsI GCNGC 2 cut(s) 364, 1159
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 5 cut(s) 273, 671, 825, 1002, 1458
Bme18I GGWCC 1 cut(s) 667
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 3 cut(s) 58, 816, 906
BmrFI CCNGG 5 cut(s) 273, 671, 825, 1002, 1458
BmrI ACTGGG 1 cut(s) 1435
BmsI GCATC 5 cut(s) 139, 841, 1275, 1338, 1428
BmuI ACTGGG 1 cut(s) 1435
BpiI GAAGAC 1 cut(s) 1437
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 2 cut(s) 50, 75
BpuEI CTTGAG 1 cut(s) 1051
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 5 cut(s) 369, 670, 1094, 1412, 1456
BsaWI WCCGGW 1 cut(s) 520
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 520, 824, 1123, 1202
Bse1I ACTGG 6 cut(s) 58, 67, 588, 932, 1271, 1430
Bse3DI GCAATG 2 cut(s) 184, 340
BseBI CCWGG 4 cut(s) 671, 825, 1002, 1458
BseDI CCNNGG 5 cut(s) 369, 670, 1094, 1412, 1456
BseGI GGATG 4 cut(s) 409, 547, 1114, 1452
BseLI CCNNNNNNNGG 5 cut(s) 116, 520, 824, 1123, 1202
BseMI GCAATG 2 cut(s) 184, 340
BseMII CTCAG 2 cut(s) 1044, 1287
BseNI ACTGG 6 cut(s) 58, 67, 588, 932, 1271, 1430
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 2 cut(s) 374, 1144
BsgI GTGCAG 1 cut(s) 1066
BshFI GGCC 3 cut(s) 513, 703, 1461
BsiHKAI GWGCWC 1 cut(s) 806
BsiSI CCGG 2 cut(s) 272, 521
BslFI GGGAC 1 cut(s) 895
BslI CCNNNNNNNGG 5 cut(s) 116, 520, 824, 1123, 1202
BsmAI GTCTC 2 cut(s) 270, 1380
BsmBI CGTCTC 2 cut(s) 270, 1380
BsmFI GGGAC 1 cut(s) 895
BsmI GAATGC 2 cut(s) 15, 982
BsnI GGCC 3 cut(s) 513, 703, 1461
Bsp1286I GDGCHC 2 cut(s) 230, 806
Bsp143I GATC 5 cut(s) 845, 904, 1119, 1408, 1479
Bsp19I CCATGG 1 cut(s) 1094
BspACI CCGC 2 cut(s) 1183, 1288
BspANI GGCC 3 cut(s) 513, 703, 1461
BspCNI CTCAG 2 cut(s) 1045, 1288
BspLI GGNNCC 3 cut(s) 58, 816, 906
BspMAI CTGCAG 2 cut(s) 292, 364
BspPI GGATC 4 cut(s) 840, 899, 912, 1403
BsrDI GCAATG 2 cut(s) 184, 340
BsrI ACTGG 6 cut(s) 58, 67, 588, 932, 1271, 1430
BssECI CCNNGG 5 cut(s) 369, 670, 1094, 1412, 1456
BssMI GATC 5 cut(s) 845, 904, 1119, 1408, 1479
BssT1I CCWWGG 2 cut(s) 1094, 1412
Bst2UI CCWGG 4 cut(s) 671, 825, 1002, 1458
Bst4CI ACNGT 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 173, 896
BstDEI CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
BstDSI CCRYGG 2 cut(s) 369, 1094
BstF5I GGATG 4 cut(s) 409, 547, 1114, 1452
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 5 cut(s) 848, 907, 1122, 1411, 1482
BstMAI GTCTC 2 cut(s) 270, 1380
BstMBI GATC 5 cut(s) 845, 904, 1119, 1408, 1479
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 632
BstNI CCWGG 4 cut(s) 671, 825, 1002, 1458
BstNSI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
BstSCI CCNGG 5 cut(s) 271, 669, 823, 1000, 1456
BstSFI CTRYAG 4 cut(s) 288, 360, 792, 909
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 374, 1144
BstV2I GAAGAC 1 cut(s) 1437
BstX2I RGATCY 2 cut(s) 845, 904
BstYI RGATCY 2 cut(s) 845, 904
BsuRI GGCC 3 cut(s) 513, 703, 1461
BtgI CCRYGG 2 cut(s) 369, 1094
BtgZI GCGATG 3 cut(s) 743, 980, 1298
BtsCI GGATG 4 cut(s) 409, 547, 1114, 1452
BtsIMutI CAGTG 2 cut(s) 60, 884
Cac8I GCNNGC 2 cut(s) 173, 896
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 667
CseI GACGC 1 cut(s) 1397
Csp6I GTAC 5 cut(s) 581, 867, 1171, 1303, 1446
CviQI GTAC 5 cut(s) 581, 867, 1171, 1303, 1446
DdeI CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
DpnI GATC 5 cut(s) 847, 906, 1121, 1410, 1481
DpnII GATC 5 cut(s) 845, 904, 1119, 1408, 1479
DraI TTTAAA 1 cut(s) 1243
EaeI YGGCCR 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 1094, 1412
Eco32I GATATC 2 cut(s) 26, 1368
Eco47I GGWCC 1 cut(s) 667
Eco57I CTGAAG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 667
EcoRII CCWGG 4 cut(s) 669, 823, 1000, 1456
EcoRV GATATC 2 cut(s) 26, 1368
EcoT14I CCWWGG 2 cut(s) 1094, 1412
ErhI CCWWGG 2 cut(s) 1094, 1412
Esp3I CGTCTC 2 cut(s) 270, 1380
FalI AAGNNNNNCTT 6 cut(s) 29, 61, 729, 761, 1316, 1348
FaqI GGGAC 1 cut(s) 895
FbaI TGATCA 1 cut(s) 1479
Fnu4HI GCNGC 2 cut(s) 363, 1158
FokI GGATG 4 cut(s) 416, 554, 1121, 1439
Fsp4HI GCNGC 2 cut(s) 363, 1158
FspBI CTAG 4 cut(s) 20, 71, 296, 461
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 363, 1158
GsuI CTGGAG 2 cut(s) 50, 75
HaeIII GGCC 3 cut(s) 513, 703, 1461
HapII CCGG 2 cut(s) 272, 521
HgaI GACGC 1 cut(s) 1397
HhaI GCGC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 1258
HindII GTYRAC 1 cut(s) 1258
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 8 cut(s) 239, 498, 527, 928, 950, 1495, 1501, 1507
HpaI GTTAAC 1 cut(s) 1258
HpaII CCGG 2 cut(s) 272, 521
Hpy166II GTNNAC 5 cut(s) 475, 604, 720, 1146, 1258
Hpy188I TCNGA 9 cut(s) 148, 503, 571, 640, 1054, 1467, 1500, 1506, 1512
Hpy188III TCNNGA 5 cut(s) 29, 746, 992, 1216, 1371
Hpy8I GTNNAC 5 cut(s) 475, 604, 720, 1146, 1258
HpyAV CCTTC 4 cut(s) 140, 498, 658, 1472
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 3 cut(s) 279, 325, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 632
HpyF3I CTNAG 5 cut(s) 46, 98, 212, 1053, 1296
HpySE526I ACGT 3 cut(s) 279, 325, 1025
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 1479
KspAI GTTAAC 1 cut(s) 1258
Kzo9I GATC 5 cut(s) 845, 904, 1119, 1408, 1479
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 374, 1144
LweI GCATC 5 cut(s) 139, 841, 1275, 1338, 1428
MaeI CTAG 4 cut(s) 20, 71, 296, 461
MaeII ACGT 3 cut(s) 279, 325, 1025
MaeIII GTNAC 4 cut(s) 49, 796, 839, 1191
MalI GATC 5 cut(s) 847, 906, 1121, 1410, 1481
MboI GATC 5 cut(s) 845, 904, 1119, 1408, 1479
MboII GAAGA 3 cut(s) 103, 457, 1442
MflI RGATCY 2 cut(s) 845, 904
MhlI GDGCHC 2 cut(s) 230, 806
MlsI TGGCCA 1 cut(s) 703
MluNI TGGCCA 1 cut(s) 703
MlyI GAGTC 5 cut(s) 507, 521, 1504, 1510, 1516
MnlI CCTC 4 cut(s) 312, 517, 541, 1195
Mox20I TGGCCA 1 cut(s) 703
MroXI GAANNNNTTC 2 cut(s) 819, 1142
MscI TGGCCA 1 cut(s) 703
MseI TTAA 7 cut(s) 378, 611, 852, 1208, 1242, 1257, 1401
MslI CAYNNNNRTG 3 cut(s) 599, 889, 1151
Msp20I TGGCCA 1 cut(s) 703
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 2 cut(s) 272, 521
MspR9I CCNGG 5 cut(s) 273, 671, 825, 1002, 1458
Mva1269I GAATGC 2 cut(s) 15, 982
MvaI CCWGG 4 cut(s) 671, 825, 1002, 1458
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 632
NciI CCSGG 1 cut(s) 273
NcoI CCATGG 1 cut(s) 1094
NdeII GATC 5 cut(s) 845, 904, 1119, 1408, 1479
NlaIV GGNNCC 3 cut(s) 58, 816, 906
NsbI TGCGCA 1 cut(s) 176
NspI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
PaeI GCATGC 1 cut(s) 175
PciI ACATGT 2 cut(s) 1188, 1471
PctI GAATGC 2 cut(s) 15, 982
PdmI GAANNNNTTC 2 cut(s) 819, 1142
PfeI GAWTC 3 cut(s) 239, 928, 950
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 2 cut(s) 271, 1000
PkrI GCNGC 2 cut(s) 364, 1159
PleI GAGTC 5 cut(s) 506, 521, 1503, 1509, 1515
PpsI GAGTC 5 cut(s) 506, 521, 1503, 1509, 1515
PpuMI RGGWCCY 1 cut(s) 667
PscI ACATGT 2 cut(s) 1188, 1471
PsiI TTATAA 2 cut(s) 137, 1104
Psp5II RGGWCCY 1 cut(s) 667
Psp6I CCWGG 4 cut(s) 669, 823, 1000, 1456
PspGI CCWGG 4 cut(s) 669, 823, 1000, 1456
PspN4I GGNNCC 3 cut(s) 58, 816, 906
PspPI GGNCC 1 cut(s) 667
PspPPI RGGWCCY 1 cut(s) 667
PstI CTGCAG 2 cut(s) 292, 364
PsuI RGATCY 2 cut(s) 845, 904
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 5 cut(s) 582, 868, 1172, 1304, 1447
RsaNI GTAC 5 cut(s) 581, 867, 1171, 1303, 1446
RseI CAYNNNNRTG 3 cut(s) 599, 889, 1151
SaqAI TTAA 7 cut(s) 378, 611, 852, 1208, 1242, 1257, 1401
SatI GCNGC 2 cut(s) 363, 1158
Sau3AI GATC 5 cut(s) 845, 904, 1119, 1408, 1479
Sau96I GGNCC 1 cut(s) 667
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 5 cut(s) 507, 521, 1504, 1510, 1516
ScrFI CCNGG 5 cut(s) 273, 671, 825, 1002, 1458
SduI GDGCHC 2 cut(s) 230, 806
SfaNI GCATC 5 cut(s) 139, 841, 1275, 1338, 1428
SfcI CTRYAG 4 cut(s) 288, 360, 792, 909
SinI GGWCC 1 cut(s) 667
SmiMI CAYNNNNRTG 3 cut(s) 599, 889, 1151
SmlI CTYRAG 1 cut(s) 1030
SmoI CTYRAG 1 cut(s) 1030
SphI GCATGC 1 cut(s) 175
SsiI CCGC 2 cut(s) 1183, 1288
SspI AATATT 2 cut(s) 115, 1238
SspMI CTAG 4 cut(s) 20, 71, 296, 461
StyD4I CCNGG 5 cut(s) 271, 669, 823, 1000, 1456
StyI CCWWGG 2 cut(s) 1094, 1412
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 3 cut(s) 282, 328, 1028
TaqI TCGA 1 cut(s) 1422
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 3 cut(s) 239, 928, 950
Tru1I TTAA 7 cut(s) 378, 611, 852, 1208, 1242, 1257, 1401
Tru9I TTAA 7 cut(s) 378, 611, 852, 1208, 1242, 1257, 1401
TscAI CASTG 2 cut(s) 67, 891
TseI GCWGC 2 cut(s) 362, 1157
TspDTI ATGAA 7 cut(s) 17, 344, 351, 630, 677, 1057, 1058
TspGWI ACGGA 1 cut(s) 838
TspRI CASTG 2 cut(s) 67, 891
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 667
XapI RAATTY 2 cut(s) 1063, 1226
XceI RCATGY 6 cut(s) 175, 431, 894, 1177, 1192, 1475
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 819, 1142
XspI CTAG 4 cut(s) 20, 71, 296, 461
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.