Rh7AG313400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002355
Physical Location & Seq
Forward (+)
35267220 .. 35267972
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG313400.1

Sequence Viewer

Length: 285 bp
ATGGTTTTCTGGCTAAACTGGGCATATTCTCGTCCTACATCAAAGTTTGAGATGGAAGCCAATTACCTAAACCACTCACTCTTCCAGAGTCTTCTGGAGCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAATCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACACTAATGCTATCTACAATAAGACCCGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

94

Amino Acids

11.13

Weight (kDa)

5.14

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 64 8.3e-13 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 2 cut(s) 105, 210
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 100, 226
AluI AGCT 2 cut(s) 100, 226
Alw21I GWGCWC 1 cut(s) 102
BanII GRGCYC 2 cut(s) 102, 142
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 2 cut(s) 46, 128
BmiI GGNNCC 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 102, 142
Bsp143I GATC 2 cut(s) 163, 232
BspACI CCGC 2 cut(s) 105, 210
BspLI GGNNCC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 23
BssMI GATC 2 cut(s) 163, 232
Bst6I CTCTTC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 143
BstKTI GATC 2 cut(s) 166, 235
BstMBI GATC 2 cut(s) 163, 232
BstV2I GAAGAC 1 cut(s) 83
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 13, 59, 100, 140, 226
CviKI_1 RGCY 5 cut(s) 13, 59, 100, 140, 226
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 165, 234
DpnII GATC 2 cut(s) 163, 232
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 2 cut(s) 94, 199
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 102, 142
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 102, 142
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 25, 221
FatI CATG 1 cut(s) 219
FriOI GRGCYC 2 cut(s) 102, 142
GsuI CTGGAG 1 cut(s) 116
Hin1II CATG 1 cut(s) 223
HinfI GANTC 2 cut(s) 88, 279
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 85, 95
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 163, 232
LmnI GCTCC 3 cut(s) 97, 137, 223
LpnPI CCDG 4 cut(s) 4, 80, 98, 211
MalI GATC 2 cut(s) 165, 234
MboI GATC 2 cut(s) 163, 232
MboII GAAGA 4 cut(s) 73, 83, 170, 173
MhlI GDGCHC 2 cut(s) 102, 142
MluCI AATT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 1 cut(s) 217
NdeII GATC 2 cut(s) 163, 232
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 133
PfeI GAWTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 220
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 139
SacI GAGCTC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 163, 232
SchI GAGTC 1 cut(s) 97
SduI GDGCHC 2 cut(s) 102, 142
SetI ASST 3 cut(s) 69, 102, 228
Sse9I AATT 1 cut(s) 61
SsiI CCGC 2 cut(s) 105, 210
SstI GAGCTC 1 cut(s) 102
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 61
TfiI GAWTC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.