Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002355

Physical Location & Seq

Genomic Coordinates Forward (+)

18221827 .. 18224459

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATGAGTAGCGTTGTGAAGAAGCTCCTGTTTTGTGGAGCAAAGGGGTTTCCCTCCATCACAGACTCAGAGGACTCTCGAATCTGTCGAATGCTGCAGCCTGTGCCACAAGCCGGTCAAGTCCGTGTGTACGTCGGAAGGGACTTTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACTACCCACTCTTCCAGAGCCTACTGGAGCTCTCCGCCGAGCAGGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGCGATGTCAATCTCTTCTATCATCTTCTTCGTCTCCTTGAAACCAGAAATCCTTCCGCCCATTATATGGAGCTTTCCGATCTCATTTCCAACTTTGTCAAGAAGTTCTTGTTCTGTGGAGCAAAGGGGTTTCCCTCCATCTCGGACGACTCTCGAGTGGTGCCTGTGGCACAAGCCGGTCAAGTCCGGGTGTACGTTGGTAGAGACGTTAACATGATGTGCAAGTTTGAGATTGAAGCCAATTACCTAAACCACCCACTTTTCCAGAGTCTACTGGAGCTCTCTGCCGAGCAAGAGTTCGGTTATTCATACGATGGAGCCCTAAGAATAGCCTGCGACGTCGATCTCTTCCTCTACATTCTTCGTCTCCTTGAAACCAGCAATCCCTCCGCCCATTATATGGAGCTTTCCGATCTCATTTCCAAGTTCCATAGCACTACTAGTGCTACTGCAACTAAACCTGCTACTGCATGCTGCCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

252

Amino Acids

28.33

Weight (kDa)

5.26

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	33 - 103	5.9e-14	Auxin responsive protein
Auxin_inducible	PF02519	139 - 214	2.9e-16	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43040 AT1G43040 AT5G42410
fragaria_vesca	FvH4_5g26860 FvH4_5g26890
rosa_chinensis	RchiOBHm_Chr7g0217801 RchiOBHm_Chr7g0217811 RchiOBHm_Chr7g0217831 RchiOBHm_Chr7g0217911
rosa_laevigata	RLG00000002434 RLG00000002435 RLG00000002436 RLG00000002438
rosa_multiflora	Rmu_sc0000202.1_g000027 Rmu_sc0004530.1_g000003 Rmu_sc0005209.1_g000005 Rmu_sc0014282.1_g000003 Rmu_sc0014282.1_g000008
rosa_roxburghii	Rroxscaffold_3G00241630 Rroxscaffold_3G00241660 Rroxscaffold_3G00241680
rosa_rugosa	Rorug07G0171200 Rorug07G0171200 Rorug07G0172200
rosa_samantha	Rh7AG312800 Rh7AG312900 Rh7AG313400 Rh7AG313800 Rh7BG303800 Rh7BG304700 Rh7CG331300 Rh7CG331400 Rh7CG331700 Rh7DG311500 Rh7DG311800 Rh7DG311900 Rh7DG312300 Rh7DG312500
rosa_wichuraiana	Rw0G017270 Rw7G026490 Rw7G026500 Rw7G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	754
AatII	GACGTC	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	739
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	2 cut(s)	337, 670
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	3 cut(s)	222, 327, 660
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	131, 464
AfiI	CCNNNNNNNGG	3 cut(s)	113, 337, 670
AgsI	TTSAA	3 cut(s)	311, 506, 644
AhlI	ACTAGT	1 cut(s)	710
AluBI	AGCT	5 cut(s)	25, 217, 343, 550, 676
AluI	AGCT	5 cut(s)	25, 217, 343, 550, 676
Alw21I	GWGCWC	2 cut(s)	219, 552
Alw26I	GTCTC	3 cut(s)	308, 468, 641
Ama87I	CYCGRG	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	94, 97, 744
Asp700I	GAANNNNTTC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	4 cut(s)	219, 259, 552, 592
Bbv12I	GWGCWC	2 cut(s)	219, 552
BbvI	GCAGC	3 cut(s)	81, 109, 731
BccI	CCATC	5 cut(s)	65, 163, 245, 416, 578
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	3 cut(s)	308, 468, 641
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	739
BisI	GCNGC	3 cut(s)	95, 98, 745
BlsI	GCNGC	3 cut(s)	96, 99, 746
Bme1390I	CCNGG	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	423
BmiI	GGNNCC	3 cut(s)	256, 432, 589
BmrFI	CCNGG	1 cut(s)	458
BpmI	CTGGAG	2 cut(s)	233, 566
BpuMI	CCSGG	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 337, 670
Bse118I	RCCGGY	2 cut(s)	113, 446
Bse1I	ACTGG	2 cut(s)	216, 549
Bse8I	GATNNNNATC	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	113, 337, 670
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	216, 549
BseXI	GCAGC	3 cut(s)	81, 109, 731
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	219, 552
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	3 cut(s)	114, 447, 457
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	113, 337, 670
BsmAI	GTCTC	3 cut(s)	308, 468, 641
BsmBI	CGTCTC	3 cut(s)	308, 468, 641
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	4 cut(s)	219, 259, 552, 592
Bsp143I	GATC	4 cut(s)	148, 349, 613, 682
BspACI	CCGC	3 cut(s)	222, 327, 660
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	256, 432, 589
BspMAI	CTGCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	739
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	2 cut(s)	113, 446
BsrI	ACTGG	2 cut(s)	216, 549
BssAI	RCCGGY	2 cut(s)	113, 446
BssMI	GATC	4 cut(s)	148, 349, 613, 682
BssNI	GRCGYC	1 cut(s)	609
Bst6I	CTCTTC	3 cut(s)	203, 290, 623
BstACI	GRCGYC	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	271, 604, 742
BstDEI	CTNAG	3 cut(s)	67, 260, 593
BstKTI	GATC	4 cut(s)	151, 352, 616, 685
BstMAI	GTCTC	3 cut(s)	308, 468, 641
BstMBI	GATC	4 cut(s)	148, 349, 613, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	81, 109, 731
BtgZI	GCGATG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	3 cut(s)	271, 604, 742
Cfr10I	RCCGGY	2 cut(s)	113, 446
Csp6I	GTAC	2 cut(s)	130, 463
CviAII	CATG	2 cut(s)	484, 741
CviQI	GTAC	2 cut(s)	130, 463
DdeI	CTNAG	3 cut(s)	67, 260, 593
DpnI	GATC	4 cut(s)	150, 351, 615, 684
DpnII	GATC	4 cut(s)	148, 349, 613, 682
Eam1104I	CTCTTC	3 cut(s)	203, 290, 623
EarI	CTCTTC	3 cut(s)	203, 290, 623
EciI	GGCGGA	3 cut(s)	211, 316, 649
Ecl136II	GAGCTC	2 cut(s)	217, 550
Eco24I	GRGCYC	4 cut(s)	219, 259, 552, 592
Eco53kI	GAGCTC	2 cut(s)	217, 550
Eco88I	CYCGRG	1 cut(s)	423
EcoICRI	GAGCTC	2 cut(s)	217, 550
EcoT38I	GRGCYC	4 cut(s)	219, 259, 552, 592
Esp3I	CGTCTC	3 cut(s)	308, 468, 641
FaeI	CATG	2 cut(s)	487, 744
FaiI	YATR	9 cut(s)	336, 338, 485, 580, 669, 671, 702, 742, 754
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	483, 740
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	95, 98, 745
FriOI	GRGCYC	4 cut(s)	219, 259, 552, 592
Fsp4HI	GCNGC	3 cut(s)	95, 98, 745
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	3 cut(s)	95, 98, 745
GsuI	CTGGAG	2 cut(s)	233, 566
HapII	CCGG	3 cut(s)	114, 447, 457
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	487, 744
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	5 cut(s)	65, 74, 81, 419, 538
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	3 cut(s)	114, 447, 457
Hpy166II	GTNNAC	4 cut(s)	130, 463, 481, 542
Hpy188I	TCNGA	6 cut(s)	70, 137, 153, 349, 415, 682
Hpy188III	TCNNGA	5 cut(s)	78, 202, 370, 423, 535
Hpy8I	GTNNAC	4 cut(s)	130, 463, 481, 542
Hpy99I	CGWCG	3 cut(s)	137, 611, 614
HpyAV	CCTTC	2 cut(s)	132, 333
HpyCH4IV	ACGT	4 cut(s)	132, 465, 477, 609
HpyCH4V	TGCA	5 cut(s)	97, 159, 492, 722, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	3 cut(s)	67, 260, 593
HpySE526I	ACGT	4 cut(s)	132, 465, 477, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	487, 744
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	148, 349, 613, 682
LmnI	GCTCC	9 cut(s)	30, 38, 214, 254, 340, 389, 547, 587, 673
Lsp1109I	GCAGC	3 cut(s)	81, 109, 731
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	4 cut(s)	132, 465, 477, 609
MalI	GATC	4 cut(s)	150, 351, 615, 684
MboI	GATC	4 cut(s)	148, 349, 613, 682
MboII	GAAGA	7 cut(s)	31, 190, 277, 287, 290, 610, 623
MhlI	GDGCHC	4 cut(s)	219, 259, 552, 592
MluCI	AATT	2 cut(s)	178, 511
MlyI	GAGTC	4 cut(s)	59, 68, 413, 547
MmeI	TCCRAC	2 cut(s)	115, 384
MnlI	CCTC	5 cut(s)	64, 64, 415, 632, 667
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	1 cut(s)	480
MspI	CCGG	3 cut(s)	114, 447, 457
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	4 cut(s)	148, 349, 613, 682
NlaIII	CATG	2 cut(s)	487, 744
NlaIV	GGNNCC	3 cut(s)	256, 432, 589
NmeAIII	GCCGAG	2 cut(s)	250, 583
NspI	RCATGY	1 cut(s)	744
PaeI	GCATGC	1 cut(s)	744
PaeR7I	CTCGAG	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PctI	GAATGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	2 cut(s)	337, 670
PkrI	GCNGC	3 cut(s)	96, 99, 746
PleI	GAGTC	4 cut(s)	59, 68, 413, 546
PpsI	GAGTC	4 cut(s)	59, 68, 413, 546
PsiI	TTATAA	1 cut(s)	754
Psp124BI	GAGCTC	2 cut(s)	219, 552
PspN4I	GGNNCC	3 cut(s)	256, 432, 589
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	131, 464
RsaNI	GTAC	2 cut(s)	130, 463
SacI	GAGCTC	2 cut(s)	219, 552
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	95, 98, 745
Sau3AI	GATC	4 cut(s)	148, 349, 613, 682
SchI	GAGTC	4 cut(s)	59, 68, 413, 547
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	4 cut(s)	219, 259, 552, 592
SfcI	CTRYAG	1 cut(s)	95
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	710
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	2 cut(s)	178, 511
SsiI	CCGC	3 cut(s)	222, 327, 660
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	2 cut(s)	219, 552
StyD4I	CCNGG	1 cut(s)	456
TaiI	ACGT	4 cut(s)	135, 468, 480, 612
TaqI	TCGA	4 cut(s)	79, 88, 424, 612
TasI	AATT	2 cut(s)	178, 511
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseI	GCWGC	3 cut(s)	94, 97, 744
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	113
Van91I	CCANNNNNTGG	2 cut(s)	337, 670
XceI	RCATGY	1 cut(s)	744
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	711
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.