FvH4_5g26890

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002355
Physical Location & Seq
Forward (+)
18245948 .. 18246762
815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26890.t1

Sequence Viewer

Length: 363 bp
ATGATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCGAAGGGGTTTCCCTCCATCTCGGACGACTCTCGAATACAAGCCGGTCACGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGATGCCAATTACCTAAACCATCCACTCTTCCAGAGTCTATTGGAGCTCTCGGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGGATAGCCTGCGACGTCGATCTCTTCCACTATCTTCTTCATCTTCTTGAAACCAGCAACCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACACTAGCGCTATCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

5.16

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 24 - 94 5.5e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 249
AfeI AGCGCT 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 1 cut(s) 284
AjiI CACGTC 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 3 cut(s) 28, 190, 316
AluI AGCT 3 cut(s) 28, 190, 316
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 108
Aor51HI AGCGCT 1 cut(s) 349
AoxI GGCC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 233
BanII GRGCYC 2 cut(s) 192, 232
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 4 cut(s) 68, 136, 171, 218
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 151, 163
BseLI CCNNNNNNNGG 1 cut(s) 310
BseX3I CGGCCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 192, 232
Bsp143I GATC 3 cut(s) 121, 253, 322
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 3 cut(s) 121, 253, 322
BssNI GRCGYC 1 cut(s) 249
Bst6I CTCTTC 3 cut(s) 106, 176, 263
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 151, 163
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 3 cut(s) 124, 256, 325
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 121, 253, 322
BstMCI CGRYCG 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 197
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 151, 163
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 1 cut(s) 86
CviAII CATG 1 cut(s) 310
CviJI RGCY 7 cut(s) 28, 86, 190, 197, 230, 242, 316
CviKI_1 RGCY 7 cut(s) 28, 86, 190, 197, 230, 242, 316
DdeI CTNAG 1 cut(s) 233
DpnI GATC 3 cut(s) 123, 255, 324
DpnII GATC 3 cut(s) 121, 253, 322
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 3 cut(s) 106, 176, 263
EarI CTCTTC 3 cut(s) 106, 176, 263
EciI GGCGGA 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 192, 232
Eco47III AGCGCT 1 cut(s) 349
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 2 cut(s) 192, 232
FaeI CATG 1 cut(s) 313
FaiI YATR 1 cut(s) 311
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 1 cut(s) 309
FokI GGATG 2 cut(s) 150, 158
FriOI GRGCYC 2 cut(s) 192, 232
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 2 cut(s) 71, 178
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 3 cut(s) 67, 126, 322
Hpy188III TCNNGA 3 cut(s) 75, 175, 281
Hpy99I CGWCG 2 cut(s) 251, 254
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 93, 249
HpyCH4V TGCA 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 93, 249
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 348
Kzo9I GATC 3 cut(s) 121, 253, 322
LmnI GCTCC 4 cut(s) 41, 187, 227, 313
LpnPI CCDG 4 cut(s) 100, 188, 256, 301
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 93, 249
MaeIII GTNAC 1 cut(s) 89
MalI GATC 3 cut(s) 123, 255, 324
MboI GATC 3 cut(s) 121, 253, 322
MboII GAAGA 7 cut(s) 34, 123, 163, 250, 260, 263, 269
MhlI GDGCHC 2 cut(s) 192, 232
MluCI AATT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 65, 187
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 67, 307
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 87
NdeII GATC 3 cut(s) 121, 253, 322
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 229
NmeAIII GCCGAG 2 cut(s) 173, 223
NmuCI GTSAC 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 310
PleI GAGTC 2 cut(s) 65, 186
PpsI GAGTC 2 cut(s) 65, 186
Psp124BI GAGCTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 121, 253, 322
SchI GAGTC 2 cut(s) 65, 187
SduI GDGCHC 2 cut(s) 192, 232
SetI ASST 6 cut(s) 30, 96, 159, 192, 252, 318
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 192
TaiI ACGT 2 cut(s) 96, 252
TaqI TCGA 2 cut(s) 76, 252
TasI AATT 1 cut(s) 151
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 310
XspI CTAG 1 cut(s) 345
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.