Rh7BG304700

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002355
Physical Location & Seq
Forward (+)
28989785 .. 28995790
6006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG304700.1

Sequence Viewer

Length: 252 bp
ATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCATTTCAGACTCAGACGACTCTCGAGTAGTGCCTATGACACAAGCCGGTCAAGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTTCTGGAGCTCTCCGCCGAGCAAGAGTTCGATTTCTCTAAAATTTTGGACAATACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

83

Amino Acids

9.31

Weight (kDa)

4.72

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 77 6.3e-07 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 234
AluBI AGCT 2 cut(s) 22, 202
AluI AGCT 2 cut(s) 22, 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 75
ApoI RAATTY 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 75
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 98
BseMII CTCAG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 118, 188
BstBAI YACGTR 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 64
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 133
BstSNI TACGTA 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 98
CviJI RGCY 4 cut(s) 22, 98, 161, 202
CviKI_1 RGCY 4 cut(s) 22, 98, 161, 202
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 118, 188
EarI CTCTTC 2 cut(s) 118, 188
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 202
Eco105I TACGTA 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
FaiI YATR 1 cut(s) 89
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FriOI GRGCYC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 1 cut(s) 99
HinfI GANTC 3 cut(s) 62, 71, 190
HpaII CCGG 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 61, 67, 138
Hpy188III TCNNGA 3 cut(s) 75, 187, 197
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 248
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 35, 199
LpnPI CCDG 3 cut(s) 112, 182, 200
MaeII ACGT 1 cut(s) 248
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 28, 135, 175, 185
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 163, 234
MlyI GAGTC 3 cut(s) 56, 65, 199
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 61
MspI CCGG 1 cut(s) 99
NdeII GATC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 75
PleI GAGTC 3 cut(s) 56, 65, 198
PpsI GAGTC 3 cut(s) 56, 65, 198
Ppu21I YACGTR 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 3 cut(s) 56, 65, 199
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 24, 171, 204, 251
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SnaBI TACGTA 1 cut(s) 249
Sse9I AATT 2 cut(s) 163, 234
SsiI CCGC 1 cut(s) 207
SstI GAGCTC 1 cut(s) 204
TaiI ACGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 76, 222
TasI AATT 2 cut(s) 163, 234
TspGWI ACGGA 1 cut(s) 98
XapI RAATTY 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.