Rh7DG311900

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002355
Physical Location & Seq
Forward (+)
36615148 .. 36615522
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG311900.1

Sequence Viewer

Length: 375 bp
ATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCATTTCAGACTCAGACGACTCTCGAGTAGTGCCTATGACACAAGCCGGTCAAGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAACCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACGCTAGTGCTATCTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

13.96

Weight (kDa)

4.85

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 98 3.8e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 193
AciI CCGC 2 cut(s) 207, 312
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 3 cut(s) 22, 202, 328
AluI AGCT 3 cut(s) 22, 202, 328
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 75
BanII GRGCYC 2 cut(s) 204, 244
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 148, 230
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 204, 244
Bsp143I GATC 3 cut(s) 133, 265, 334
BspACI CCGC 2 cut(s) 207, 312
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 3 cut(s) 133, 265, 334
Bst6I CTCTTC 2 cut(s) 118, 188
BstDEI CTNAG 2 cut(s) 64, 245
BstKTI GATC 3 cut(s) 136, 268, 337
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 133, 265, 334
Cfr10I RCCGGY 1 cut(s) 98
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
CviKI_1 RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
DdeI CTNAG 2 cut(s) 64, 245
DpnI GATC 3 cut(s) 135, 267, 336
DpnII GATC 3 cut(s) 133, 265, 334
Eam1104I CTCTTC 2 cut(s) 118, 188
EarI CTCTTC 2 cut(s) 118, 188
EciI GGCGGA 2 cut(s) 196, 301
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 244
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 204, 244
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 89, 323
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 321
FblI GTMKAC 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 204, 244
FspBI CTAG 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 325
HinfI GANTC 3 cut(s) 62, 71, 190
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 61, 67, 138, 334
Hpy188III TCNNGA 2 cut(s) 75, 187
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 64, 245
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 3 cut(s) 133, 265, 334
LmnI GCTCC 4 cut(s) 35, 199, 239, 325
LpnPI CCDG 4 cut(s) 112, 182, 200, 313
MaeI CTAG 1 cut(s) 357
MalI GATC 3 cut(s) 135, 267, 336
MboI GATC 3 cut(s) 133, 265, 334
MboII GAAGA 5 cut(s) 28, 135, 175, 272, 275
MhlI GDGCHC 2 cut(s) 204, 244
MluCI AATT 2 cut(s) 163, 370
MlyI GAGTC 3 cut(s) 56, 65, 199
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 2 cut(s) 61, 319
MspI CCGG 1 cut(s) 99
NdeII GATC 3 cut(s) 133, 265, 334
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 3 cut(s) 56, 65, 198
PpsI GAGTC 3 cut(s) 56, 65, 198
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 133, 265, 334
SchI GAGTC 3 cut(s) 56, 65, 199
SduI GDGCHC 2 cut(s) 204, 244
SetI ASST 4 cut(s) 24, 171, 204, 330
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 2 cut(s) 163, 370
SsiI CCGC 2 cut(s) 207, 312
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 204
TaqI TCGA 2 cut(s) 76, 264
TasI AATT 2 cut(s) 163, 370
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.