Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014282.1

Orthogroup ID

OG0002355

Physical Location & Seq

Genomic Coordinates Forward (+)

9456 .. 9854

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014282.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgatgagtagcattgtgaagaagctcttgttctgtggagcaaaggggtttccctccatctctgactcggacgactctcgtgtagtgcctgcgccacaagccggtcatgtccgtgtgtacgttggaagagatattaacatgatgtgcaagtttgagatagaagccaattacttaaaccacccactattccggagtctactccagctctccgcagatcaagagttcggttattcctacgatggagctctaagaatagcgtgcgacgtcgatctcttccactacattcttcatctcctcgataccagcaatccctctgcccattacatggagctttctgatctcatttccaagttctacagcgctagtgctactataactacactcgctaaaactgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

132

Amino Acids

14.69

Weight (kDa)

5.88

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43040 AT1G43040 AT5G42410
fragaria_vesca	FvH4_5g26860 FvH4_5g26890
rosa_chinensis	RchiOBHm_Chr7g0217801 RchiOBHm_Chr7g0217811 RchiOBHm_Chr7g0217831 RchiOBHm_Chr7g0217911
rosa_laevigata	RLG00000002434 RLG00000002435 RLG00000002436 RLG00000002438
rosa_multiflora	Rmu_sc0000202.1_g000027 Rmu_sc0004530.1_g000003 Rmu_sc0005209.1_g000005 Rmu_sc0014282.1_g000003 Rmu_sc0014282.1_g000008
rosa_roxburghii	Rroxscaffold_3G00241630 Rroxscaffold_3G00241660 Rroxscaffold_3G00241680
rosa_rugosa	Rorug07G0171200 Rorug07G0171200 Rorug07G0172200
rosa_samantha	Rh7AG312800 Rh7AG312900 Rh7AG313400 Rh7AG313800 Rh7BG303800 Rh7BG304700 Rh7CG331300 Rh7CG331400 Rh7CG331700 Rh7DG311500 Rh7DG311800 Rh7DG311900 Rh7DG312300 Rh7DG312500
rosa_wichuraiana	Rw0G017270 Rw7G026490 Rw7G026500 Rw7G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	101, 325
AluBI	AGCT	4 cut(s)	25, 205, 245, 331
AluI	AGCT	4 cut(s)	25, 205, 245, 331
Alw21I	GWGCWC	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	189
Aor51HI	AGCGCT	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	94, 362
BanII	GRGCYC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	247
BccI	CCATC	2 cut(s)	65, 233
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 325
Bse118I	RCCGGY	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	101, 325
BseRI	GAGGAG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	102, 190
BslI	CCNNNNNNNGG	2 cut(s)	101, 325
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	214, 268, 337
BspACI	CCGC	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	3 cut(s)	214, 268, 337
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst6I	CTCTTC	2 cut(s)	121, 278
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	90, 259
BstDEI	CTNAG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	94, 362
BstKTI	GATC	3 cut(s)	217, 271, 340
BstMBI	GATC	3 cut(s)	214, 268, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 392
BstSFI	CTRYAG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	90, 259
CfoI	GCGC	2 cut(s)	94, 362
Cfr10I	RCCGGY	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	107, 139, 325
CviJI	RGCY	6 cut(s)	25, 101, 164, 205, 245, 331
CviKI_1	RGCY	6 cut(s)	25, 101, 164, 205, 245, 331
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	216, 270, 339
DpnII	GATC	3 cut(s)	214, 268, 337
Eam1104I	CTCTTC	2 cut(s)	121, 278
EarI	CTCTTC	2 cut(s)	121, 278
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco47III	AGCGCT	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	3 cut(s)	110, 142, 328
FaiI	YATR	4 cut(s)	108, 140, 326, 374
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	3 cut(s)	106, 138, 324
FblI	GTMKAC	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	2 cut(s)	93, 361
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	363
HapII	CCGG	2 cut(s)	102, 190
HhaI	GCGC	2 cut(s)	94, 362
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	110, 142, 328
Hin6I	GCGC	2 cut(s)	92, 360
HinP1I	GCGC	2 cut(s)	92, 360
HinfI	GANTC	3 cut(s)	65, 74, 193
HpaII	CCGG	2 cut(s)	102, 190
Hpy166II	GTNNAC	2 cut(s)	118, 197
Hpy188I	TCNGA	3 cut(s)	64, 70, 337
Hpy188III	TCNNGA	2 cut(s)	190, 218
Hpy8I	GTNNAC	2 cut(s)	118, 197
Hpy99I	CGWCG	2 cut(s)	266, 269
HpyCH4IV	ACGT	2 cut(s)	120, 264
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 392
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	2 cut(s)	120, 264
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	110, 142, 328
HspAI	GCGC	2 cut(s)	92, 360
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	214, 268, 337
LmnI	GCTCC	3 cut(s)	38, 242, 328
LpnPI	CCDG	5 cut(s)	102, 115, 203, 215, 316
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	120, 264
MalI	GATC	3 cut(s)	216, 270, 339
MboI	GATC	3 cut(s)	214, 268, 337
MboII	GAAGA	4 cut(s)	31, 138, 265, 278
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	59, 68, 202
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	64, 305, 322
MroI	TCCGGA	1 cut(s)	189
MseI	TTAA	2 cut(s)	135, 173
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	2 cut(s)	102, 190
MwoI	GCNNNNNNNGC	2 cut(s)	98, 392
NdeII	GATC	3 cut(s)	214, 268, 337
NlaIII	CATG	3 cut(s)	110, 142, 328
PflMI	CCANNNNNTGG	1 cut(s)	325
PleI	GAGTC	3 cut(s)	59, 68, 201
PpsI	GAGTC	3 cut(s)	59, 68, 201
Psp124BI	GAGCTC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	135, 173
Sau3AI	GATC	3 cut(s)	214, 268, 337
SchI	GAGTC	3 cut(s)	59, 68, 202
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	27, 123, 207, 247, 267, 333
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	247
TaiI	ACGT	2 cut(s)	123, 267
TaqI	TCGA	2 cut(s)	267, 297
TasI	AATT	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	135, 173
Tru9I	TTAA	2 cut(s)	135, 173
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.