Rorug07G0171200

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002355
Physical Location & Seq
Reverse (-)
13910655 .. 13913339
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0171200.1

Sequence Viewer

Length: 465 bp
ATGCCTCAAGGAACCTTAGACGTTCAACTTATGAAGGCCAAGGGTCTAAAAAACACAGAGTTCTTTGGTAAGATGGATCCTTACGTCATCCTCAAGTGCAAAAACCAGGAAAAAAGGAGCAAAGTGGCAACATCACAAGGGTCTAACCCAGAATGGAATGAGAAGTTTGTTTTCCGAGTAACTGAGGGTGTTACTGAACTCAAAATGACGATCATGGACAAGGACACTGCTACCAGGGATGATTTTGTAGGAGAGTTAAGCATTCCACTAAAAACACTATTCCAAGAAGGGAAACTCCCACCAATGAAATACAATGTACTAAGGAACAAAAAATACTACGGAGAGATTAAAGTTGGCCTTAGCTTCACTCCTTCAACGAACACTACGGACATCCCGGACGGCGTGACAGTCAAGGCGAAGGCTCAGGTGATCGGAGCCGAAGGTATGCGTAGCGAGCTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

9.23

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 98 2.6e-25 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 71, 84
AfaI GTAC 1 cut(s) 318
AgsI TTSAA 2 cut(s) 26, 375
AjnI CCWGG 2 cut(s) 105, 233
AluBI AGCT 2 cut(s) 363, 457
AluI AGCT 2 cut(s) 363, 457
Alw21I GWGCWC 1 cut(s) 459
AlwI GGATC 2 cut(s) 71, 84
AoxI GGCC 2 cut(s) 36, 355
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 439
BamHI GGATCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 459
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 2 cut(s) 107, 235
BcnI CCSGG 1 cut(s) 395
Bme1390I CCNGG 3 cut(s) 107, 235, 395
BmiI GGNNCC 3 cut(s) 13, 78, 436
BmrFI CCNGG 3 cut(s) 107, 235, 395
Bpu10I CCTNAGC 2 cut(s) 359, 423
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 39, 234
BseBI CCWGG 2 cut(s) 107, 235
BseDI CCNNGG 2 cut(s) 39, 234
BseGI GGATG 3 cut(s) 87, 244, 390
BseMII CTCAG 2 cut(s) 174, 437
BshFI GGCC 2 cut(s) 38, 357
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 1 cut(s) 395
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 2 cut(s) 38, 357
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 76, 210, 429
BspANI GGCC 2 cut(s) 38, 357
BspCNI CTCAG 2 cut(s) 175, 436
BspLI GGNNCC 3 cut(s) 13, 78, 436
BspPI GGATC 2 cut(s) 71, 84
BssECI CCNNGG 2 cut(s) 39, 234
BssMI GATC 3 cut(s) 76, 210, 429
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 107, 235
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 455, 459
BstDEI CTNAG 5 cut(s) 16, 183, 320, 359, 423
BstF5I GGATG 3 cut(s) 87, 244, 390
BstKTI GATC 3 cut(s) 79, 213, 432
BstMBI GATC 3 cut(s) 76, 210, 429
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 2 cut(s) 107, 235
BstSCI CCNGG 3 cut(s) 105, 233, 393
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 38, 357
BtsCI GGATG 3 cut(s) 87, 244, 390
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 455, 459
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 38, 357, 363, 422, 437, 457
CviKI_1 RGCY 6 cut(s) 38, 357, 363, 422, 437, 457
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 5 cut(s) 16, 183, 320, 359, 423
DpnI GATC 3 cut(s) 78, 212, 431
DpnII GATC 3 cut(s) 76, 210, 429
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 105, 233
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 32, 215, 446
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 1 cut(s) 213
FokI GGATG 3 cut(s) 74, 251, 377
FriOI GRGCYC 1 cut(s) 459
HaeIII GGCC 2 cut(s) 38, 357
HapII CCGG 1 cut(s) 395
Hin1II CATG 1 cut(s) 217
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 176, 434
HpyAV CCTTC 5 cut(s) 28, 281, 381, 412, 434
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 21, 84
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 5 cut(s) 16, 183, 320, 359, 423
HpySE526I ACGT 2 cut(s) 21, 84
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 3 cut(s) 76, 210, 429
LmnI GCTCC 2 cut(s) 117, 434
LpnPI CCDG 7 cut(s) 92, 119, 162, 220, 247, 408, 410
MaeII ACGT 2 cut(s) 21, 84
MaeIII GTNAC 3 cut(s) 178, 190, 403
MalI GATC 3 cut(s) 78, 212, 431
MboI GATC 3 cut(s) 76, 210, 429
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 459
MnlI CCTC 3 cut(s) 15, 101, 178
MseI TTAA 2 cut(s) 257, 348
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 107, 235, 395
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 2 cut(s) 107, 235
MwoI GCNNNNNNNGC 1 cut(s) 454
NciI CCSGG 1 cut(s) 395
NdeII GATC 3 cut(s) 76, 210, 429
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 13, 78, 436
NmuCI GTSAC 1 cut(s) 403
PctI GAATGC 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 105, 233
PspGI CCWGG 2 cut(s) 105, 233
PspN4I GGNNCC 3 cut(s) 13, 78, 436
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 257, 348
Sau3AI GATC 3 cut(s) 76, 210, 429
ScrFI CCNGG 3 cut(s) 107, 235, 395
SduI GDGCHC 1 cut(s) 459
SetI ASST 7 cut(s) 17, 24, 87, 365, 429, 445, 459
SmlI CTYRAG 2 cut(s) 6, 92
SmoI CTYRAG 2 cut(s) 6, 92
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 105, 233, 393
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 2 cut(s) 24, 87
TatI WGTACW 1 cut(s) 316
Tru1I TTAA 2 cut(s) 257, 348
Tru9I TTAA 2 cut(s) 257, 348
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 47, 320
TspGWI ACGGA 2 cut(s) 354, 401
TspRI CASTG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.